CFinderADM001599's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrial pyruvate transport | 6.91E-06 | GO:0006850 |
| signal recognition particle, endoplasmic reticulum targeting | 4.15E-05 | GO:0005786 |
| signal recognition particle binding | 6.32E-05 | GO:0005047 |
| 7S RNA binding | 6.32E-05 | GO:0008312 |
| SRP-dependent cotranslational protein targeting to membrane | 8.96E-05 | GO:0006614 |
| diacylglycerol and triacylglycerol biosynthesis | 0.000275252 | plantCyc |
| Protein export | 0.000275252 | KEGG pathway |
| acid phosphatase activity | 0.000355207 | GO:0003993 |
| lipid binding | 0.000540867 | GO:0008289 |
| response to stress | 0.00125734 | GO:0006950 |
| mitochondrial inner membrane | 0.001584794 | GO:0005743 |
| dephosphorylation | 0.001731273 | GO:0016311 |
| regulation of transcription, DNA-templated | 0.034345441 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003363 | AT5G04220 (3.00E-17) | SYT3|synaptotagmin 3 |
| CRO_T006171 | AT1G13750 (0) | Purple acid phosphatases superfamily protein |
| CRO_T011403 | AT4G22310 (1.00E-42) | Uncharacterised protein family (UPF0041) |
| CRO_T014056 | AT1G67650 (0) | SRP72 RNA-binding domain |
| CRO_T023100 | AT1G48300 (1.00E-21) | DGAT3|diacylglycerol acyltransferase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000147 | Sulfur relay system tRNA modification lipid binding response to stress transferase activity regulation of transcription, DNA-templated | details |
| CFinderADM000800 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation Pentose phosphate pathway fatty-acyl-CoA synthase activity ribokinase activity signal recognition particle binding 7S RNA binding jasmonic acid biosynthetic process D-ribose metabolic process SRP-dependent cotranslational protein targeting to membrane signal recognition particle, endoplasmic reticulum targeting membrane jasmonic acid biosynthesis carbohydrate phosphorylation diacylglycerol and triacylglycerol biosynthesis Protein export hydrolase activity, acting on glycosyl bonds polygalacturonase activity Transcription_related, Transcription factor: HB protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity Peroxisome plant-type cell wall trans-Golgi network endosome protein folding cell wall organization extracellular region sequence-specific DNA binding | details |
| CFinderADM001215 | CAAX-protein geranylgeranyltransferase activity CAAX-protein geranylgeranyltransferase complex phosphogluconate dehydrogenase (decarboxylating) activity chromosome, centromeric region protein geranylgeranylation mitotic nuclear division diacylglycerol and triacylglycerol biosynthesis lipid binding NAD binding response to water deprivation response to auxin response to stress response to abscisic acid vacuolar membrane | details |
| CFinderADM001411 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 tissue development plant organ development anatomical structure morphogenesis cellular response to stimulus regulation of response to stimulus response to organic substance response to bacterium Ubiquitin_Proteasome_system, DUB: JAMM defense response to other organism response to osmotic stress lipid binding single-organism cellular process response to stress regulation of cellular process Endocytosis MAPK signaling pathway - plant Ubiquitin_Proteasome_system, E3 adaptor: F-box transport regulation of transcription, DNA-templated | details |
| CFinderADM001598 | Estrogen signaling pathway signal recognition particle binding oxidized purine nucleobase lesion DNA N-glycosylase activity ATG1/ULK1 kinase complex signal recognition particle, endoplasmic reticulum targeting 7S RNA binding FK506 binding SRP-dependent cotranslational protein targeting to membrane autophagy photosynthesis, light reaction chaperone-mediated protein folding Autophagy - animal damaged DNA binding protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity membrane part Protein export Ubiquitin_Proteasome_system, E3 adaptor: SKP1 cytosolic small ribosomal subunit DNA repair Photosynthesis plastid endoplasmic reticulum membrane Ribosome RNA binding translation structural constituent of ribosome | details |
| CFinderADM001713 | Phenylpropanoid biosynthesis Cytochrome_P450, Cytochrome P450: CYP98A flavonoid 3'-monooxygenase activity 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity heme binding chlorogenic acid biosynthesis II chlorogenic acid biosynthesis I transmembrane transporter activity lipid binding response to stress plant-type cell wall organization hydrogen peroxide catabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII peroxidase activity membrane plant-type cell wall response to oxidative stress oxidation-reduction process cellular oxidant detoxification extracellular region adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity iron ion binding phosphorylation transmembrane transport nucleotide binding integral component of membrane regulation of transcription, DNA-templated | details |
| CFinderADM001909 | signal peptidase complex nucleoside diphosphate phosphorylation protein targeting to ER GTP biosynthetic process UTP biosynthetic process CTP biosynthetic process nucleoside diphosphate kinase activity signal peptide processing adenosine deoxyribonucleotides de novo biosynthesis CMP phosphorylation guanosine deoxyribonucleotides de novo biosynthesis I guanosine ribonucleotides de novo biosynthesis purine deoxyribonucleosides salvage pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I NAD/NADH phosphorylation and dephosphorylation aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) pyrimidine ribonucleotides interconversion diacylglycerol and triacylglycerol biosynthesis Protein export peptidase activity Purine metabolism intracellular | details |
| CFinderADM002198 | Cytochrome_P450, Cytochrome P450: CYP90A anther wall tapetum cell differentiation brassinosteroid biosynthesis I brassinosteroid biosynthesis II glycerophosphodiester phosphodiesterase activity Brassinosteroid biosynthesis positive regulation of flower development pollen exine formation response to UV-B spliceosomal complex cellular transition metal ion homeostasis brassinosteroid homeostasis brassinosteroid biosynthetic process sterol metabolic process metal ion transport mRNA splicing, via spliceosome lipid binding transition metal ion binding response to stress lipid metabolic process Spliceosome monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen iron ion binding heme binding integral component of membrane regulation of transcription, DNA-templated | details |
| CFinderADM002245 | Estrogen signaling pathway ATG1/ULK1 kinase complex Autophagy - animal FK506 binding autophagy chaperone-mediated protein folding protein peptidyl-prolyl isomerization diacylglycerol and triacylglycerol biosynthesis peptidyl-prolyl cis-trans isomerase activity endoplasmic reticulum membrane | details |
| CFinderADM002246 | phosphopyruvate hydratase complex signal peptidase complex Estrogen signaling pathway phosphopyruvate hydratase activity protein targeting to ER signal peptide processing FK506 binding chaperone-mediated protein folding glycolytic process protein peptidyl-prolyl isomerization diacylglycerol and triacylglycerol biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Protein export peptidyl-prolyl cis-trans isomerase activity lipid binding response to stress peptidase activity endoplasmic reticulum membrane magnesium ion binding Carbon metabolism regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |