CFinderADM001653's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| single organismal cell-cell adhesion | 6.38E-06 | GO:0016337 |
| pectic galactan metabolic process | 6.38E-06 | GO:0010401 |
| sphingomyelin phosphodiesterase D activity | 1.07E-05 | GO:0050290 |
| glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 1.07E-05 | GO:0001888 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 1.37E-05 | cazy family |
| heparan sulfate proteoglycan biosynthetic process | 2.12E-05 | GO:0015012 |
| glycosaminoglycan biosynthetic process | 2.23E-05 | GO:0006024 |
| Transcription_related, Transcription regulator: SWI/SNF-BAF60b | 2.55E-05 | TF family |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 6.55E-05 | GO:0050508 |
| phloem or xylem histogenesis | 0.000129771 | GO:0010087 |
| serine-type carboxypeptidase activity | 0.000560523 | GO:0004185 |
| lyase activity | 0.000768096 | GO:0016829 |
| translational initiation | 0.000932223 | GO:0006413 |
| response to abscisic acid | 0.001163052 | GO:0009737 |
| proteolysis involved in cellular protein catabolic process | 0.001163052 | GO:0051603 |
| translation initiation factor activity | 0.001815136 | GO:0003743 |
| trans-Golgi network | 0.003236948 | GO:0005802 |
| endosome | 0.003236948 | GO:0005768 |
| vacuole | 0.003236948 | GO:0005773 |
| integral component of membrane | 0.032625494 | GO:0016021 |
| DNA binding | 0.040945076 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003074 | AT5G19950 (1.00E-55) | Domain of unknown function (DUF1767) |
| CRO_T003728 | AT2G35780 (7.00E-32) | scpl26|serine carboxypeptidase-like 26 |
| CRO_T014466 | AT1G71350 (0) | eukaryotic translation initiation factor SUI1 family protein |
| CRO_T019749 | AT3G55830 (9.00E-59) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T024091 | AT5G47400 (0) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001577 | Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001794 | sphingomyelin phosphodiesterase D activity regulation of mitotic cell cycle regulation of cyclin-dependent protein serine/threonine kinase activity endomembrane system cytoplasmic part calcium ion binding hydrolase activity | details |
| CFinderADM001822 | Pyrimidine metabolism uracil degradation I (reductive) beta-ureidopropionase activity dCMP deaminase activity pyrimidine nucleotide metabolic process uracil catabolic process Transcription_related, Transcription regulator: SWI/SNF-BAF60b Transcription_related, Transcription factor: C2C2-GATA Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) zinc ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc translational initiation intracellular part integral component of membrane translation initiation factor activity cellular process sequence-specific DNA binding Golgi apparatus transcription factor activity, sequence-specific DNA binding protein serine/threonine kinase activity | details |
| CFinderADM001951 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NF-X1 single organismal cell-cell adhesion regulation of photoperiodism, flowering pectic galactan metabolic process negative regulation of response to stimulus transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity negative regulation of transcription from RNA polymerase II promoter negative regulation of post-embryonic development negative regulation of reproductive process heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process shoot system development gene expression glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity RNA metabolic process Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis RNA polymerase II regulatory region sequence-specific DNA binding transaminase activity transcription from RNA polymerase II promoter response to abscisic acid trans-Golgi network endosome nucleic acid binding | details |
| CFinderADM002248 | condensed chromosome kinetochore nuclear pore outer ring chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore distribution Transcription_related, Transcription regulator: SWI/SNF-BAF60b RNA export from nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore protein import into nucleus translational initiation translation initiation factor activity membrane RNA transport regulation of transcription, DNA-templated chloroplast | details |
| CFinderADM002256 | Transcription_related, Transcription factor: VOZ glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc single organismal cell-cell adhesion pectic galactan metabolic process long-day photoperiodism, flowering positive regulation of long-day photoperiodism, flowering defense response to bacterium, incompatible interaction glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process ubiquinone biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity cold acclimation extrinsic component of mitochondrial inner membrane phloem or xylem histogenesis response to heat response to water deprivation positive regulation of transcription, DNA-templated response to abscisic acid trans-Golgi network endosome sequence-specific DNA binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM002260 | formation of glycosidic bonds, GlycosylTransferases: GTnc CIA complex single organismal cell-cell adhesion pectic galactan metabolic process heparan sulfate proteoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glycosaminoglycan biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis iron-sulfur cluster assembly adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation response to abscisic acid transferase activity, transferring acyl groups endosome trans-Golgi network GTP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |