CFinderADM001794's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sphingomyelin phosphodiesterase D activity | 7.52E-06 | GO:0050290 |
| regulation of mitotic cell cycle | 2.02E-05 | GO:0007346 |
| regulation of cyclin-dependent protein serine/threonine kinase activity | 2.64E-05 | GO:0000079 |
| endomembrane system | 0.002636338 | GO:0012505 |
| cytoplasmic part | 0.002636338 | GO:0044444 |
| calcium ion binding | 0.011342011 | GO:0005509 |
| hydrolase activity | 0.032637856 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002871 | AT5G21274 (3.00E-14) | CAM6|calmodulin 6 |
| CRO_T014280 | AT5G06830 (0) | unknown protein |
| CRO_T024091 | AT5G47400 (0) | unknown protein |
| CRO_T026912 | AT1G03910 (2.00E-23) | CTN|CACTIN |
| CRO_T028323 | AT5G41970 (1.00E-71) | Metal-dependent protein hydrolase |
| CRO_T030534 | AT2G03810 (1.00E-04) | 18S pre-ribosomal assembly protein gar2-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000528 | Transcription_related, Transcription factor: G2-like proteasome complex Proteasome microtubule-severing ATPase activity protein catabolic process peptidase activity calcium ion binding proteolysis cytoplasm | details |
| CFinderADM000966 | Transcription_related, Transcription factor: BSD phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) regulation of mitotic cell cycle xenobiotic-transporting ATPase activity regulation of cyclin-dependent protein serine/threonine kinase activity protein tyrosine/serine/threonine phosphatase activity xenobiotic transport xylogalacturonan biosynthesis cellular macromolecule metabolic process peptidyl-tyrosine dephosphorylation nucleic acid metabolic process Transcription_related, Transcription factor: NF-YC protein tyrosine phosphatase activity non-membrane spanning protein tyrosine kinase activity ABC transporters Basal transcription factors peptidyl-tyrosine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Plant-pathogen interaction drug transmembrane transport protein heterodimerization activity endomembrane system nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001653 | single organismal cell-cell adhesion pectic galactan metabolic process sphingomyelin phosphodiesterase D activity glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process Transcription_related, Transcription regulator: SWI/SNF-BAF60b glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis serine-type carboxypeptidase activity lyase activity translational initiation response to abscisic acid proteolysis involved in cellular protein catabolic process translation initiation factor activity trans-Golgi network endosome vacuole integral component of membrane DNA binding | details |
| CFinderADM001959 | simple leaf morphogenesis regulation of mitotic cell cycle regulation of auxin mediated signaling pathway regulation of cyclin-dependent protein serine/threonine kinase activity SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex SCF ubiquitin ligase complex Transcription_related, Transcription regulator: TRAF Transcription_related, Transcription factor: C2C2-GATA ubiquitin conjugating enzyme binding protein polyubiquitination zinc ion binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process endomembrane system intracellular part Ubiquitin_Proteasome_system, E3 adaptor: BTB cellular process Plant hormone signal transduction protein ubiquitination ubiquitin protein ligase activity ubiquitin-protein transferase activity sequence-specific DNA binding Ubiquitin_Proteasome_system, E3 adaptor: F-box Ubiquitin_Proteasome_system, E3: RING transcription factor activity, sequence-specific DNA binding nucleic acid binding regulation of transcription, DNA-templated | details |
| CFinderADM002225 | nuclear origin of replication recognition complex DNA replication origin binding UDP-glucose 4-epimerase activity galactose metabolic process DNA replication initiation Transcription_related, Transcription factor: C2C2-Dof Cell cycle cytoplasmic part Amino sugar and nucleotide sugar metabolism hydrolase activity nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |