CFinderADM001760's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphoglycerate kinase activity | 1.48E-05 | GO:0004618 |
| phosphate-containing compound metabolic process | 5.25E-05 | GO:0006796 |
| reductive pentose-phosphate cycle | 5.25E-05 | GO:0019253 |
| inorganic diphosphatase activity | 0.000135791 | GO:0004427 |
| glycolytic process | 0.00026922 | GO:0006096 |
| Calvin-Benson-Bassham cycle | 0.00083085 | plantCyc |
| gluconeogenesis I | 0.00083085 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.00083085 | plantCyc |
| glycolysis IV (plant cytosol) | 0.00083085 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.00083085 | plantCyc |
| Phenylpropanoid biosynthesis | 0.001132407 | KEGG pathway |
| coenzyme binding | 0.001277983 | GO:0050662 |
| heterocyclic compound binding | 0.001750039 | GO:1901363 |
| organic cyclic compound binding | 0.001750039 | GO:0097159 |
| helicase activity | 0.001750039 | GO:0004386 |
| magnesium ion binding | 0.0030731 | GO:0000287 |
| catalytic activity | 0.010799177 | GO:0003824 |
| Carbon metabolism | 0.011567188 | KEGG pathway |
| Oxidative phosphorylation | 0.011567188 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005805 | AT5G27680 (0) | RECQSIM|RECQ helicase SIM |
| CRO_T012894 | AT1G56190 (0) | Phosphoglycerate kinase family protein |
| CRO_T013279 | AT1G31480 (4.00E-77) | SGR2|SHOOT GRAVITROPISM 2 |
| CRO_T018601 | AT2G33590 (8.00E-114) | CRL1|CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 |
| CRO_T023549 | AT1G01050 (2.00E-15) | AtPPa1|pyrophosphorylase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000468 | thiosulfate disproportionation IV (rhodanese) resolution of recombination intermediates Golgi vesicle budding sister chromatid cohesion Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation phospholipid translocation double-strand break repair via homologous recombination COP9 signalosome Smc5-Smc6 complex Sulfur metabolism phospholipid-translocating ATPase activity Phenylpropanoid biosynthesis RNA processing coenzyme binding Golgi membrane Spliceosome trans-Golgi network magnesium ion binding plasmodesma | details |
| CFinderADM000731 | Herpes simplex infection detection of brassinosteroid stimulus positive regulation of protein export from nucleus root hair cell differentiation brassinosteroid mediated signaling pathway Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ubiquitin_Proteasome_system, E3: RING leaf morphogenesis multidimensional cell growth Phenylpropanoid biosynthesis protein autophosphorylation response to auxin cytosol Transcription_related, Transcription factor: C2H2 coenzyme binding Ubiquitin_Proteasome_system, E3: U-box | details |
| CFinderADM001303 | Non-homologous end-joining cellular response to X-ray cellular response to gamma radiation Ku70:Ku80 complex oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex telomeric DNA binding 2-oxoglutarate decarboxylation to succinyl-CoA double-strand break repair via nonhomologous end joining telomere maintenance cullin deneddylation 1,3-β-D-glucan biosynthesis nuclear chromosome, telomeric region COP9 signalosome ATP-dependent DNA helicase activity (1->3)-beta-D-glucan biosynthetic process thiamine pyrophosphate binding Ubiquitin_Proteasome_system, DUB: JAMM 1,3-beta-D-glucan synthase complex 1,3-beta-D-glucan synthase activity DNA recombination DNA duplex unwinding tricarboxylic acid cycle damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) double-stranded DNA binding response to stimulus coenzyme binding Phenylpropanoid biosynthesis small-subunit processome cytosol nucleolus | details |
| CFinderADM002179 | coenzyme binding Transcription_related, Transcription factor: bZIP Phenylpropanoid biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity plasmodesma | details |
Expression profiles
 Show details about module gene expression profiling |