CFinderADM002212's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphoric ester hydrolase activity | 1.02E-05 | GO:0042578 |
| carboxypeptidase activity | 3.81E-05 | GO:0004180 |
| 3-phosphoinositide biosynthesis | 0.000228718 | plantCyc |
| seed development | 0.000229759 | GO:0048316 |
| biosynthetic process | 0.000869287 | GO:0009058 |
| carbohydrate binding | 0.001954787 | GO:0030246 |
| vacuolar membrane | 0.010450923 | GO:0005774 |
| plant-type cell wall | 0.010450923 | GO:0009505 |
| endoplasmic reticulum | 0.012842855 | GO:0005783 |
| Golgi apparatus | 0.012842855 | GO:0005794 |
| proteolysis | 0.013657991 | GO:0006508 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003911 | AT5G06970 (0) | Protein of unknown function (DUF810) |
| CRO_T005680 | AT3G59770 (0) | AtSAC9|SUPPRESSOR OF ACTIN 9 |
| CRO_T023919 | AT3G27670 (2.00E-73) | RST1|RESURRECTION1 |
| CRO_T026326 | - | - |
| CRO_T030804 | AT4G04614 (5.00E-33) | unknown protein |
| CRO_T033553 | AT3G62360 (0) | Carbohydrate-binding-like fold |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000893 | regulation of transcription, DNA-templated circadian regulation of gene expression positive regulation of systemic acquired resistance regulation of long-day photoperiodism, flowering regulation of jasmonic acid mediated signaling pathway regulation of ethylene-activated signaling pathway nuclear euchromatin FACT complex CCR4-NOT core complex Transcription_related, Transcription regulator: HMG negative regulation of translation polar nucleus fusion nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay response to osmotic stress cytoplasmic mRNA processing body mediator complex vegetative to reproductive phase transition of meristem RNA degradation DNA replication DNA repair serine-type endopeptidase activity 2-alkenal reductase [NAD(P)] activity proteolysis transcription, DNA-templated DNA binding | details |
| CFinderADM001763 | Golgi to plasma membrane transport exocyst assembly transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex exocyst Ras signaling pathway protein polyubiquitination RNA polymerase III activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Purine metabolism ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING nucleic acid binding nucleotide binding | details |
| CFinderADM001782 | threonine-type endopeptidase activity cytosolic ribosome proteasome core complex Proteasome proteolysis involved in cellular protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001796 | regulation of microtubule-based process cytoskeleton-dependent intracellular transport protein localization ATP-dependent microtubule motor activity, plus-end-directed proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity Proteasome root development microtubule-based movement kinesin complex microtubule binding ubiquitin-dependent protein catabolic process microtubule | details |
| CFinderADM002054 | L-ascorbate degradation V ascorbate glutathione cycle SUMO activating enzyme activity regulation of mitotic cell cycle hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E1: ThiF seed maturation protein sumoylation seed germination RNA splicing beta-galactosidase activity Ascorbate and aldarate metabolism Ubiquitin mediated proteolysis response to abscisic acid peroxidase activity carbohydrate binding cellular oxidant detoxification response to oxidative stress formation of glycosidic bonds, GlycosylTransferases: GTnc vacuolar membrane plant-type cell wall carbohydrate metabolic process heme binding | details |
Expression profiles
 Show details about module gene expression profiling |