CFinderADM002225's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nuclear origin of replication recognition complex | 9.60E-06 | GO:0005664 |
| DNA replication origin binding | 3.50E-05 | GO:0003688 |
| UDP-glucose 4-epimerase activity | 3.50E-05 | GO:0003978 |
| galactose metabolic process | 5.03E-05 | GO:0006012 |
| DNA replication initiation | 5.03E-05 | GO:0006270 |
| Transcription_related, Transcription factor: C2C2-Dof | 0.00010327 | TF family |
| Cell cycle | 0.000781621 | KEGG pathway |
| cytoplasmic part | 0.001494523 | GO:0044444 |
| Amino sugar and nucleotide sugar metabolism | 0.001570049 | KEGG pathway |
| hydrolase activity | 0.026110285 | GO:0016787 |
| nucleotide binding | 0.030968276 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004635 | AT1G10155 (4.00E-08) | ATPP2-A10|phloem protein 2-A10 |
| CRO_T014097 | AT3G55370 (4.00E-36) | OBP3|OBF-binding protein 3 |
| CRO_T017188 | AT2G01120 (2.00E-123) | ATORC4|ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
| CRO_T028323 | AT5G41970 (1.00E-71) | Metal-dependent protein hydrolase |
| CRO_T029684 | AT1G30620 (5.00E-21) | HSR8|HIGH SUGAR RESPONSE8; MUR4|MURUS 4; UXE1|UDP-D-XYLOSE 4-EPIMERASE 1 |
| CRO_T029996 | AT3G50340 (1.00E-133) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000821 | regulation of organ formation nitrate import peptide hormone binding iron ion homeostasis xylem and phloem pattern formation NAD+ ADP-ribosyltransferase activity Golgi transport complex integral component of membrane activation of MAPKK activity recognition of pollen MAP kinase kinase kinase activity signal transducer activity MAPK cascade Transcription_related, Transcription factor: C2C2-Dof Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) drug transmembrane transport signal transduction defense response drug transmembrane transporter activity Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: C2H2 antiporter activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity carbohydrate binding anchored component of plasma membrane transporter activity | details |
| CFinderADM001562 | bilirubin oxidase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) Transcription_related, Transcription factor: C2C2-Dof Plant-pathogen interaction palmitate biosynthesis II (bacteria and plants) Transcription_related, Transcription factor: WRKY oxidoreductase activity, oxidizing metal ions transferase activity, transferring glycosyl groups copper ion binding oxidation-reduction process calcium ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001736 | Transcription_related, Transcription factor: C2C2-Dof | details |
| CFinderADM001794 | sphingomyelin phosphodiesterase D activity regulation of mitotic cell cycle regulation of cyclin-dependent protein serine/threonine kinase activity endomembrane system cytoplasmic part calcium ion binding hydrolase activity | details |
| CFinderADM001950 | glyoxalase III activity fatty-acyl-CoA synthase activity cellular response to hydrogen peroxide lactate biosynthetic process oxidoreductase activity jasmonic acid biosynthetic process methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Transcription_related, Transcription factor: C2C2-Dof transcription coactivator activity glutamine metabolic process jasmonic acid biosynthesis single-organism metabolic process regulation of transcription from RNA polymerase II promoter Peroxisome transferase activity | details |
| CFinderADM002186 | peptide hormone binding nitrate import xylem and phloem pattern formation activation of MAPKK activity MAP kinase kinase kinase activity Transcription_related, Transcription factor: C2C2-Dof MAPK cascade Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity intracellular | details |
| CFinderADM002226 | peptide hormone binding nitrate import long-chain fatty acid-CoA ligase activity xylem and phloem pattern formation long-chain fatty acid metabolic process activation of MAPKK activity Transcription_related, Transcription factor: C2C2-Dof MAP kinase kinase kinase activity MAPK cascade Fatty acid metabolism actin binding cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) stearate biosynthesis II (bacteria and plants) sporopollenin precursors biosynthesis phosphatidylcholine acyl editing palmitate biosynthesis II (bacteria and plants) suberin monomers biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity intracellular | details |
Expression profiles
 Show details about module gene expression profiling |