CFinderADM001993's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| diaminopimelate decarboxylase activity | 7.94E-06 | GO:0008836 |
| lysine biosynthetic process via diaminopimelate | 3.14E-05 | GO:0009089 |
| L-lysine biosynthesis VI | 4.33E-05 | plantCyc |
| protein binding | 0.001528922 | GO:0005515 |
| Biosynthesis of amino acids | 0.0020823 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000472 | AT5G52552 (3.00E-15) | CPuORF14|conserved peptide upstream open reading frame 14 |
| CRO_T011885 | AT5G17840 (1.00E-28) | DnaJ/Hsp40 cysteine-rich domain superfamily protein |
| CRO_T017020 | AT5G63000 (1.00E-80) | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein |
| CRO_T021507 | AT3G59670 (1.00E-43) | unknown protein |
| CRO_T022402 | AT5G49410 (3.00E-49) | unknown protein |
| CRO_T022512 | AT3G14390 (0) | Pyridoxal-dependent decarboxylase family protein |
| CRO_T032388 | AT5G16660 (3.00E-35) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000380 | spliceosomal complex assembly U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex protein binding | details |
| CFinderADM000779 | IMP dehydrogenase activity peptide metabolic process GMP biosynthetic process Ubiquitin_Proteasome_system, DUB: JAMM guanosine ribonucleotides de novo biosynthesis cullin deneddylation adenosine nucleotides degradation I COP9 signalosome protein disulfide isomerase activity formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex cell metalloendopeptidase activity metal ion binding translation initiation factor activity cell redox homeostasis Purine metabolism RNA transport Protein processing in endoplasmic reticulum proteolysis | details |
| CFinderADM000916 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc double-strand break repair via nonhomologous end joining protein ADP-ribosylation DNA ligation involved in DNA repair lagging strand elongation NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity chitin binding chitinase activity chitin catabolic process Base excision repair Amino sugar and nucleotide sugar metabolism MAPK signaling pathway - plant carbohydrate metabolic process extracellular region | details |
| CFinderADM001213 | MAPK signaling pathway - yeast protein domain specific binding nuclear envelope U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex assembly protein import into nucleus spliceosomal complex protein transporter activity protein binding signal transduction | details |
| CFinderADM001214 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) allantoin catabolic process ureide catabolic process purine nucleobase catabolic process ureidoglycine aminohydrolase activity histidine phosphotransfer kinase activity cytokinin-activated signaling pathway protein histidine kinase binding protein domain specific binding spliceosomal complex assembly U4/U6 x U5 tri-snRNP complex U5 snRNP MAPK signaling pathway - yeast spliceosomal complex phosphorelay signal transduction system protein binding Plant hormone signal transduction Purine metabolism phosphorylation integral component of membrane | details |
| CFinderADM001526 | regulation of ethylene-activated signaling pathway peptide metabolic process response to ethylene response to auxin Transcription_related, Transcription factor: ERF metalloendopeptidase activity Plant-pathogen interaction Spliceosome proteolysis | details |
| CFinderADM001858 | organic acid transmembrane transport DNA damage checkpoint Protein_kinases_phosphatases, PPC:4.1.1: MAP3K organic acid transmembrane transporter activity checkpoint clamp complex Cell cycle - yeast Insulin signaling pathway activation of MAPKK activity damaged DNA binding MAP kinase kinase kinase activity cell periphery MAPK cascade DNA repair MAPK signaling pathway - plant cytoplasmic part integral component of plasma membrane chloroplast envelope | details |
| CFinderADM001926 | diaminopimelate decarboxylase activity lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI lactoylglutathione lyase activity Pyruvate metabolism Biosynthesis of amino acids protein binding membrane catalytic activity cytosol chloroplast | details |
| CFinderADM002302 | diaminopimelate decarboxylase activity rRNA (cytosine-N4-)-methyltransferase activity regulation of ruffle assembly ruffle membrane daphnetin modification rRNA base methylation protein metabolic process lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI protein histidine kinase binding phosphatidylinositol binding Biosynthesis of amino acids transferase activity, transferring glycosyl groups membrane formation of glycosidic bonds, GlycosylTransferases: GTnc chloroplast envelope chloroplast stroma | details |
Expression profiles
 Show details about module gene expression profiling |