CFinderADM002186's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| peptide hormone binding | 5.13E-06 | GO:0017046 |
| nitrate import | 1.38E-05 | GO:1902025 |
| xylem and phloem pattern formation | 5.17E-05 | GO:0010051 |
| activation of MAPKK activity | 0.000160669 | GO:0000186 |
| MAP kinase kinase kinase activity | 0.000178906 | GO:0004709 |
| Transcription_related, Transcription factor: C2C2-Dof | 0.000195788 | TF family |
| MAPK cascade | 0.0003812 | GO:0000165 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.001533219 | kinase family |
| 2-alkenal reductase [NAD(P)] activity | 0.001606488 | GO:0032440 |
| intracellular | 0.015796479 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012293 | AT5G49660 (0) | XIP1|XYLEM INTERMIXED WITH PHLOEM 1 |
| CRO_T013927 | AT3G19770 (5.00E-38) | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
| CRO_T014097 | AT3G55370 (4.00E-36) | OBP3|OBF-binding protein 3 |
| CRO_T025211 | - | - |
| CRO_T030128 | AT1G78895 (2.00E-48) | Reticulon family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000821 | regulation of organ formation nitrate import peptide hormone binding iron ion homeostasis xylem and phloem pattern formation NAD+ ADP-ribosyltransferase activity Golgi transport complex integral component of membrane activation of MAPKK activity recognition of pollen MAP kinase kinase kinase activity signal transducer activity MAPK cascade Transcription_related, Transcription factor: C2C2-Dof Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) drug transmembrane transport signal transduction defense response drug transmembrane transporter activity Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: C2H2 antiporter activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity carbohydrate binding anchored component of plasma membrane transporter activity | details |
| CFinderADM001245 | hydrolase activity transmembrane transporter activity benzoate biosynthesis I (CoA-dependent, β-oxidative) plasma membrane Plant hormone signal transduction Golgi apparatus transmembrane transport metabolic process integral component of membrane | details |
| CFinderADM001329 | kinesin complex Transcription_related, Transcription factor: C2H2 microtubule-based movement microtubule binding microtubule motor activity ATPase activity binding oxidoreductase activity | details |
| CFinderADM001562 | bilirubin oxidase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) Transcription_related, Transcription factor: C2C2-Dof Plant-pathogen interaction palmitate biosynthesis II (bacteria and plants) Transcription_related, Transcription factor: WRKY oxidoreductase activity, oxidizing metal ions transferase activity, transferring glycosyl groups copper ion binding oxidation-reduction process calcium ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001573 | microtubule organizing center organization microtubule nucleation spindle assembly cytokinesis by cell plate formation mitotic nuclear division microtubule-based movement ATPase activity microtubule binding microtubule motor activity kinesin complex endosome trans-Golgi network adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001594 | Cytochrome_P450, Cytochrome P450: CYP706A folate polyglutamylation II glutamate removal from folates gamma-glutamyl-peptidase activity tetrahydrofolylpolyglutamate metabolic process proteasome regulatory particle assembly Folate biosynthesis Viral carcinogenesis magnesium ion transport glutamine metabolic process magnesium ion transmembrane transport magnesium ion transmembrane transporter activity proteasome regulatory particle, base subcomplex secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen vacuole proteolysis iron ion binding heme binding hydrolase activity | details |
| CFinderADM001708 | nitrate import Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII response to nitrate starvation peptide hormone binding peptide binding xylem and phloem pattern formation ATP binding protein serine/threonine kinase activity MAP kinase kinase kinase activity activation of MAPKK activity protein phosphorylation MAPK cascade Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: bHLH 2-alkenal reductase [NAD(P)] activity intracellular signal transduction cytoplasm nucleolus adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 binding intracellular | details |
| CFinderADM001736 | Transcription_related, Transcription factor: C2C2-Dof | details |
| CFinderADM001852 | nitrate import Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII response to nitrate starvation microtubule organizing center organization peptide hormone binding microtubule nucleation peptide binding xylem and phloem pattern formation spindle assembly cytokinesis by cell plate formation mitotic nuclear division activation of MAPKK activity MAP kinase kinase kinase activity MAPK cascade Ubiquitin_Proteasome_system, E3 adaptor: BTB 2-alkenal reductase [NAD(P)] activity ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular protein serine/threonine kinase activity | details |
| CFinderADM001950 | glyoxalase III activity fatty-acyl-CoA synthase activity cellular response to hydrogen peroxide lactate biosynthetic process oxidoreductase activity jasmonic acid biosynthetic process methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Transcription_related, Transcription factor: C2C2-Dof transcription coactivator activity glutamine metabolic process jasmonic acid biosynthesis single-organism metabolic process regulation of transcription from RNA polymerase II promoter Peroxisome transferase activity | details |
| CFinderADM002225 | nuclear origin of replication recognition complex DNA replication origin binding UDP-glucose 4-epimerase activity galactose metabolic process DNA replication initiation Transcription_related, Transcription factor: C2C2-Dof Cell cycle cytoplasmic part Amino sugar and nucleotide sugar metabolism hydrolase activity nucleotide binding | details |
| CFinderADM002226 | peptide hormone binding nitrate import long-chain fatty acid-CoA ligase activity xylem and phloem pattern formation long-chain fatty acid metabolic process activation of MAPKK activity Transcription_related, Transcription factor: C2C2-Dof MAP kinase kinase kinase activity MAPK cascade Fatty acid metabolism actin binding cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) stearate biosynthesis II (bacteria and plants) sporopollenin precursors biosynthesis phosphatidylcholine acyl editing palmitate biosynthesis II (bacteria and plants) suberin monomers biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity intracellular | details |
| CFinderADM002294 | peptide hormone binding nitrate import xylem and phloem pattern formation MAP kinase kinase kinase activity activation of MAPKK activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase MAPK cascade cytoplasm Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity intracellular signal transduction ATP binding nucleolus intracellular protein serine/threonine kinase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |