CFinderADM002277's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| asparaginyl-tRNA aminoacylation | 1.71E-05 | GO:0006421 |
| asparagine-tRNA ligase activity | 2.30E-05 | GO:0004816 |
| Hedgehog signaling pathway | 2.36E-05 | KEGG pathway |
| cell morphogenesis | 3.07E-05 | GO:0000902 |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 7.68E-05 | ubs family |
| Transcription_related, Transcription regulator: TRAF | 0.000102313 | TF family |
| cysteine-type peptidase activity | 0.000137825 | GO:0008234 |
| Ubiquitin_Proteasome_system, DUB: USP | 0.000214451 | ubs family |
| cellular protein metabolic process | 0.0002303 | GO:0044267 |
| Aminoacyl-tRNA biosynthesis | 0.000674465 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.000724477 | ubs family |
| proteolysis | 0.009277555 | GO:0006508 |
| nucleic acid binding | 0.025157406 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T018339 | AT3G10980 (4.00E-177) | PLAC8 family protein |
| CRO_T019200 | AT1G01640 (4.00E-12) | BTB/POZ domain-containing protein |
| CRO_T020836 | AT3G11590 (3.00E-135) | unknown protein |
| CRO_T027862 | AT5G10790 (6.00E-108) | UBP22|ubiquitin-specific protease 22 |
| CRO_T028177 | AT5G56680 (1.00E-149) | EMB2755|EMBRYO DEFECTIVE 2755 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000759 | mRNA (guanine-N7-)-methyltransferase activity glucuronosyltransferase activity mRNA cap binding complex regulation of defense response RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping xylan biosynthetic process Hedgehog signaling pathway Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box plant-type secondary cell wall biogenesis Transcription_related, Transcription regulator: TRAF Fatty acid elongation formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity, transferring acyl groups other than amino-acyl groups very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Ubiquitin_Proteasome_system, E3 adaptor: BTB fatty acid biosynthetic process mRNA surveillance pathway Golgi apparatus | details |
| CFinderADM000832 | cellular protein metabolic process translational elongation Ubiquitin_Proteasome_system, DUB: USP cysteine-type peptidase activity translation elongation factor activity nucleotidyltransferase activity helicase activity GTPase activity intracellular proteolysis formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding | details |
| CFinderADM001178 | phytanoyl-CoA dioxygenase activity methylated histone binding root morphogenesis response to molecule of bacterial origin Ubiquitin_Proteasome_system, DUB: USP cysteine-type peptidase activity Peroxisome zinc ion binding cellular protein metabolic process proteolysis | details |
| CFinderADM001186 | coenzyme A metabolic process histidyl-tRNA aminoacylation histidine-tRNA ligase activity hydroxymethylglutaryl-CoA reductase (NADPH) activity mevalonate pathway I Transcription_related, Transcription factor: C2C2-Dof vacuolar transport isoprenoid biosynthetic process Aminoacyl-tRNA biosynthesis Terpenoid backbone biosynthesis NADP binding Endocytosis endoplasmic reticulum membrane intracellular nucleic acid binding nucleotide binding | details |
| CFinderADM001524 | proteasome core complex assembly proteasome binding limit dextrinase activity pullulanase activity asparagine-tRNA ligase activity asparaginyl-tRNA aminoacylation formation of glycosidic bonds, GlycosylTransferases: GTnc starch catabolic process cell morphogenesis starch biosynthesis Transcription_related, Transcription factor: HSF starch biosynthetic process translational elongation microtubule-based movement nucleotidyltransferase activity translation elongation factor activity microtubule motor activity Aminoacyl-tRNA biosynthesis ATPase activity microtubule binding cytoplasm microtubule kinesin complex GTPase activity RNA transport GTP binding sequence-specific DNA binding ATP binding | details |
| CFinderADM002104 | mannose-1-phosphate guanylyltransferase (GDP) activity racemase and epimerase activity, acting on carbohydrates and derivatives UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Hedgehog signaling pathway GDP-mannose biosynthesis Transcription_related, Transcription regulator: TRAF UDP-sugars interconversion L-ascorbate biosynthesis I (L-galactose pathway) cellulose synthase (UDP-forming) activity nucleotidyltransferase activity coenzyme binding Fructose and mannose metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB biosynthetic process cellulose biosynthetic process Amino sugar and nucleotide sugar metabolism RNA degradation integral component of membrane cell wall organization carbohydrate metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |