TissueCFM000038's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family | 0.005365553 | kinase family |
| L-arginine biosynthesis I (via L-ornithine) | 0.007386795 | plantCyc |
| urea cycle | 0.007386795 | plantCyc |
| L-arginine biosynthesis II (acetyl cycle) | 0.009836848 | plantCyc |
| argininosuccinate synthase activity | 0.011611938 | GO:0004055 |
| phosphoric diester hydrolase activity | 0.011611938 | GO:0008081 |
| tau-protein kinase activity | 0.011611938 | GO:0050321 |
| argininosuccinate metabolic process | 0.033723935 | GO:0000053 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004915 | - | - |
| CRO_T007159 | AT4G24830 (3.00E-118) | arginosuccinate synthase family |
| CRO_T009240 | AT5G54310 (2.00E-81) | AGD5|ARF-GAP domain 5; NEV|NEVERSHED |
| CRO_T012074 | - | - |
| CRO_T015393 | AT1G52720 (1.00E-19) | unknown protein |
| CRO_T015683 | AT1G49740 (7.00E-127) | PLC-like phosphodiesterases superfamily protein |
| CRO_T016739 | AT4G00720 (2.00E-95) | ASKTHETA|SHAGGY-LIKE PROTEIN KINASE THETA; ATSK32|shaggy-like protein kinase 32 |
| CRO_T017678 | AT4G18660 (2.00E-16) | unknown protein |
| CRO_T020827 | - | - |
| CRO_T024173 | AT5G48410 (2.00E-64) | ATGLR1.3|GLUTAMATE RECEPTOR 1.3 |
| CRO_T027984 | - | - |
| CRO_T031882 | - | - |
| CRO_T032299 | AT5G36140 (1.00E-28) | CYP716A2|cytochrome P450, family 716, subfamily A, polypeptide 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000134 | L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) | details |
| TissueCFM000175 | Biosynthesis of amino acids | details |
| TissueCFM000276 | argininosuccinate synthase activity argininosuccinate metabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process Biosynthesis of amino acids | details |
| TissueCFM000344 | Biosynthesis of amino acids Alanine, aspartate and glutamate metabolism L-arginine biosynthesis I (via L-ornithine) L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis urea cycle tau-protein kinase activity histidinol dehydrogenase activity phosphoric diester hydrolase activity argininosuccinate synthase activity Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-histidine biosynthesis superpathway of aspartate and asparagine biosynthesis argininosuccinate metabolic process response to absence of light asparagine synthase (glutamine-hydrolyzing) activity asparagine biosynthetic process histidine biosynthetic process arginine biosynthetic process glutamine metabolic process protein phosphorylation ATP binding pollen development | details |
| TissueCFM000484 | Folate biosynthesis argininosuccinate metabolic process response to temperature stimulus cytosolic proteasome complex proteasome regulatory particle, base subcomplex nuclear proteasome complex Mo-molybdopterin cofactor biosynthetic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly urea cycle L-arginine biosynthesis I (via L-ornithine) aldehyde-lyase activity argininosuccinate synthase activity Mo-molybdopterin cofactor sulfurase activity ER-associated ubiquitin-dependent protein catabolic process response to osmotic stress arginine biosynthetic process isoleucine-tRNA ligase activity phosphogluconate dehydrogenase (decarboxylating) activity molybdenum ion binding L-arginine biosynthesis II (acetyl cycle) proteasome-activating ATPase activity TBP-class protein binding Biosynthesis of amino acids Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Transcription_related, Transcription factor: WRKY | details |
| TissueCFM000580 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase chorismate synthase activity chorismate biosynthesis from 3-dehydroquinate L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) 1-aminocyclopropane-1-carboxylate synthase activity 1-aminocyclopropane-1-carboxylate biosynthetic process chorismate biosynthetic process aromatic amino acid family biosynthetic process cellular transition metal ion homeostasis cellular amino acid biosynthetic process metal ion transport transition metal ion binding FMN binding Biosynthesis of amino acids Cysteine and methionine metabolism Endocytosis pyridoxal phosphate binding | details |
| TissueCFM000588 | Biosynthesis of amino acids Protein_kinases_phosphatases, PPC:5.1.2: Other Kinase argininosuccinate synthase activity histidinol dehydrogenase activity L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis urea cycle xyloglucan biosynthesis argininosuccinate metabolic process aging histidine biosynthetic process shoot system development reproductive structure development D-myo-inositol (1,4,5)-trisphosphate biosynthesis arginine biosynthetic process single organism reproductive process 3-phosphoinositide biosynthesis | details |
| TissueCFM000751 | chorismate synthase activity chorismate biosynthesis from 3-dehydroquinate L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) 1-aminocyclopropane-1-carboxylate biosynthetic process 1-aminocyclopropane-1-carboxylate synthase activity chorismate biosynthetic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof cellular amino acid biosynthetic process FMN binding Biosynthesis of amino acids Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM000791 | Ubiquitin_Proteasome_system, E3: RING argininosuccinate metabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) argininosuccinate synthase activity L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process Biosynthesis of amino acids | details |
| TissueCFM000817 | L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) argininosuccinate metabolic process aging argininosuccinate synthase activity shoot system development reproductive structure development positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process arginine biosynthetic process single organism reproductive process regulation of transcription, DNA-templated proteasome regulatory particle, base subcomplex nuclear proteasome complex cytosolic proteasome complex Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase TBP-class protein binding proteasome-activating ATPase activity Biosynthesis of amino acids DNA binding Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: NAC | details |
| TissueCFM000917 | argininosuccinate metabolic process coenzyme A transmembrane transport urea cycle L-arginine biosynthesis I (via L-ornithine) argininosuccinate synthase activity coenzyme A transmembrane transporter activity L-arginine biosynthesis II (acetyl cycle) D-myo-inositol (1,4,5)-trisphosphate biosynthesis arginine biosynthetic process 3-phosphoinositide biosynthesis Transcription_related, Transcription factor: Trihelix Biosynthesis of amino acids flavonoid glucuronidation flavonoid biosynthetic process | details |
| TissueCFM001055 | Notch signaling pathway Transcription_related, Transcription factor: Trihelix coenzyme A transmembrane transporter activity argininosuccinate synthase activity NAD-dependent histone deacetylase activity (H3-K14 specific) L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) histone H3 deacetylation argininosuccinate metabolic process posttranscriptional gene silencing coenzyme A transmembrane transport seed maturation D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis arginine biosynthetic process Biosynthesis of amino acids vegetative to reproductive phase transition of meristem response to salt stress | details |
Expression profiles
 Show details about module gene expression profiling |