TissueCFM000580's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase | 0.002303262 | kinase family |
| chorismate synthase activity | 0.004048762 | GO:0004107 |
| chorismate biosynthesis from 3-dehydroquinate | 0.005847174 | plantCyc |
| L-methionine salvage cycle II (plants) | 0.005847174 | plantCyc |
| ethylene biosynthesis I (plants) | 0.006817168 | plantCyc |
| 1-aminocyclopropane-1-carboxylate synthase activity | 0.007082717 | GO:0016847 |
| 1-aminocyclopropane-1-carboxylate biosynthetic process | 0.009119644 | GO:0042218 |
| chorismate biosynthetic process | 0.009119644 | GO:0009423 |
| aromatic amino acid family biosynthetic process | 0.010418601 | GO:0009073 |
| cellular transition metal ion homeostasis | 0.016126177 | GO:0046916 |
| cellular amino acid biosynthetic process | 0.016126177 | GO:0008652 |
| metal ion transport | 0.017760348 | GO:0030001 |
| transition metal ion binding | 0.020187054 | GO:0046914 |
| FMN binding | 0.020187054 | GO:0010181 |
| Biosynthesis of amino acids | 0.03227381 | KEGG pathway |
| Cysteine and methionine metabolism | 0.03227381 | KEGG pathway |
| Endocytosis | 0.03227381 | KEGG pathway |
| pyridoxal phosphate binding | 0.044979151 | GO:0030170 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001766 | AT1G48850 (7.00E-149) | EMB1144|embryo defective 1144 |
| CRO_T005220 | AT2G18196 (2.00E-19) | Heavy metal transport/detoxification superfamily protein |
| CRO_T009240 | AT5G54310 (2.00E-81) | AGD5|ARF-GAP domain 5; NEV|NEVERSHED |
| CRO_T012754 | - | - |
| CRO_T017735 | AT1G07150 (4.00E-70) | MAPKKK13|mitogen-activated protein kinase kinase kinase 13 |
| CRO_T032983 | AT1G23310 (0.000000009) | AOAT1|ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1; GGAT1|GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1; GGT1|glutamate:glyoxylate aminotransferase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000038 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) argininosuccinate synthase activity phosphoric diester hydrolase activity tau-protein kinase activity argininosuccinate metabolic process | details |
| TissueCFM000157 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase transition metal ion binding Ubiquitin_Proteasome_system, DUB: OTU cellular transition metal ion homeostasis metal ion transport | details |
| TissueCFM000751 | chorismate synthase activity chorismate biosynthesis from 3-dehydroquinate L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) 1-aminocyclopropane-1-carboxylate biosynthetic process 1-aminocyclopropane-1-carboxylate synthase activity chorismate biosynthetic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof cellular amino acid biosynthetic process FMN binding Biosynthesis of amino acids Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM000817 | L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) argininosuccinate metabolic process aging argininosuccinate synthase activity shoot system development reproductive structure development positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process arginine biosynthetic process single organism reproductive process regulation of transcription, DNA-templated proteasome regulatory particle, base subcomplex nuclear proteasome complex cytosolic proteasome complex Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase TBP-class protein binding proteasome-activating ATPase activity Biosynthesis of amino acids DNA binding Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: NAC | details |
Expression profiles
 Show details about module gene expression profiling |