TissueCFM000751's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chorismate synthase activity | 0.004048762 | GO:0004107 |
| chorismate biosynthesis from 3-dehydroquinate | 0.005847174 | plantCyc |
| L-methionine salvage cycle II (plants) | 0.005847174 | plantCyc |
| ethylene biosynthesis I (plants) | 0.006817168 | plantCyc |
| 1-aminocyclopropane-1-carboxylate biosynthetic process | 0.007082717 | GO:0042218 |
| 1-aminocyclopropane-1-carboxylate synthase activity | 0.007082717 | GO:0016847 |
| chorismate biosynthetic process | 0.007082717 | GO:0009423 |
| aromatic amino acid family biosynthetic process | 0.008091544 | GO:0009073 |
| Transcription_related, Transcription factor: C2C2-Dof | 0.012746164 | TF family |
| cellular amino acid biosynthetic process | 0.013639355 | GO:0008652 |
| FMN binding | 0.021545588 | GO:0010181 |
| Biosynthesis of amino acids | 0.03227381 | KEGG pathway |
| Cysteine and methionine metabolism | 0.03227381 | KEGG pathway |
| Endocytosis | 0.03227381 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001766 | AT1G48850 (7.00E-149) | EMB1144|embryo defective 1144 |
| CRO_T005849 | AT1G21340 (3.00E-34) | Dof-type zinc finger DNA-binding family protein |
| CRO_T009240 | AT5G54310 (2.00E-81) | AGD5|ARF-GAP domain 5; NEV|NEVERSHED |
| CRO_T012754 | - | - |
| CRO_T021535 | AT1G51910 (4.00E-29) | Leucine-rich repeat protein kinase family protein |
| CRO_T032983 | AT1G23310 (0.000000009) | AOAT1|ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1; GGAT1|GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1; GGT1|glutamate:glyoxylate aminotransferase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000038 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) argininosuccinate synthase activity phosphoric diester hydrolase activity tau-protein kinase activity argininosuccinate metabolic process | details |
| TissueCFM000157 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase transition metal ion binding Ubiquitin_Proteasome_system, DUB: OTU cellular transition metal ion homeostasis metal ion transport | details |
| TissueCFM000393 | homogalacturonan biosynthesis DNA ligation involved in DNA repair lagging strand elongation protein ADP-ribosylation pectin biosynthetic process Base excision repair formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: TCP Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000531 | homogalacturonan biosynthesis DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation pectin biosynthetic process | details |
| TissueCFM000580 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase chorismate synthase activity chorismate biosynthesis from 3-dehydroquinate L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) 1-aminocyclopropane-1-carboxylate synthase activity 1-aminocyclopropane-1-carboxylate biosynthetic process chorismate biosynthetic process aromatic amino acid family biosynthetic process cellular transition metal ion homeostasis cellular amino acid biosynthetic process metal ion transport transition metal ion binding FMN binding Biosynthesis of amino acids Cysteine and methionine metabolism Endocytosis pyridoxal phosphate binding | details |
Expression profiles
 Show details about module gene expression profiling |