TissueCFM000057's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 2'-deoxymugineic acid phytosiderophore biosynthesis | 0.007959652 | plantCyc |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 0.007959652 | plantCyc |
| ubiquitin-dependent protein catabolic process | 0.011331672 | GO:0006511 |
| U12-type spliceosomal complex | 0.020271825 | GO:0005689 |
| U2-type prespliceosome | 0.020271825 | GO:0071004 |
| U2 snRNP | 0.020860231 | GO:0005686 |
| catalytic step 2 spliceosome | 0.029358604 | GO:0071013 |
| gibberellin catabolic process | 0.030252555 | GO:0045487 |
| chiasma assembly | 0.030252555 | GO:0051026 |
| triglyceride lipase activity | 0.037544863 | GO:0004806 |
| C-19 gibberellin 2-beta-dioxygenase activity | 0.037544863 | GO:0052634 |
| thiol-dependent ubiquitin-specific protease activity | 0.037544863 | GO:0004843 |
| protein deubiquitination | 0.044296794 | GO:0016579 |
| cellular amino acid metabolic process | 0.044296794 | GO:0006520 |
| spliceosomal complex assembly | 0.044296794 | GO:0000245 |
| response to light stimulus | 0.044296794 | GO:0009416 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000958 | - | - |
| CRO_T003995 | AT1G67970 (1.00E-62) | HSFA8|heat shock transcription factor A8 |
| CRO_T004352 | AT4G25515 (2.00E-116) | SLK3|SEUSS-like 3 |
| CRO_T011980 | - | - |
| CRO_T013099 | AT1G25490 (6.00E-07) | EER1|ENHANCED ETHYLENE RESPONSE 1; RCN1|ROOTS CURL IN NPA |
| CRO_T014773 | AT1G13330 (3.00E-89) | AHP2|Arabidopsis Hop2 homolog |
| CRO_T016202 | AT2G03160 (2.00E-28) | ASK19|SKP1-like 19 |
| CRO_T019512 | AT1G32260 (4.00E-47) | unknown protein |
| CRO_T021323 | AT1G10370 (9.00E-53) | ATGSTU17|GLUTATHIONE S-TRANSFERASE TAU 17; ERD9|EARLY-RESPONSIVE TO DEHYDRATION 9; GST30|GLUTATHIONE S-TRANSFERASE 30; GST30B|GLUTATHIONE S-TRANSFERASE 30B; GSTU17|GLUTATHIONE S-TRANSFERASE U17 |
| CRO_T022342 | AT5G36160 (1.00E-136) | Tyrosine transaminase family protein |
| CRO_T023876 | AT1G17120 (5.00E-107) | CAT8|cationic amino acid transporter 8 |
| CRO_T031040 | - | - |
| CRO_T031105 | AT4G16580 (1.00E-62) | Protein phosphatase 2C family protein |
| CRO_T031376 | AT3G04060 (2.00E-17) | anac046|NAC domain containing protein 46 |
| CRO_T031779 | AT2G40930 (0) | PDE323|PIGMENT DEFECTIVE EMBRYO 323; UBP5|ubiquitin-specific protease 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000010 | Transcription_related, Transcription factor: Orphans spliceosomal complex assembly U12-type spliceosomal complex U2-type prespliceosome U2 snRNP mRNA binding catalytic step 2 spliceosome signal transduction kinase activity | details |
| TissueCFM000023 | abscisic acid biosynthesis brassinosteroids inactivation brassinosteroid metabolic process Brassinosteroid biosynthesis U12-type spliceosomal complex U2-type prespliceosome U2 snRNP catalytic step 2 spliceosome spliceosomal complex assembly brassinosteroid homeostasis protein deubiquitination Transcription_related, Transcription factor: LOB Ubiquitin_Proteasome_system, DUB: USP ubiquitin-dependent protein catabolic process | details |
| TissueCFM000076 | 1,4-beta-D-xylan synthase activity protein kinase activator activity glucuronoxylan glucuronosyltransferase activity activation of protein kinase activity glucuronoxylan biosynthetic process large ribosomal subunit rRNA binding glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity plant-type secondary cell wall biogenesis chromatin silencing spliceosomal complex assembly cytoplasmic translation translational elongation formation of glycosidic bonds, GlycosylTransferases: GTnc mRNA binding Necroptosis U2 snRNP nuclear chromatin U2-type prespliceosome U12-type spliceosomal complex nucleosome preribosome, large subunit precursor catalytic step 2 spliceosome | details |
| TissueCFM000269 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) structural constituent of ribosome cytoplasmic translation poly(A) RNA binding Ribosome mitotic recombination-dependent replication fork processing uridylyltransferase activity chromosome organization involved in meiotic cell cycle DNA recombinase assembly reciprocal meiotic recombination response to ionizing radiation mitotic recombination strand invasion spliceosomal complex assembly cytosolic large ribosomal subunit translation potassium ion binding recombinase activity pyruvate kinase activity DNA-dependent ATPase activity four-way junction DNA binding Rho guanyl-nucleotide exchange factor activity endodeoxyribonuclease activity Transcription_related, Transcription factor: LOB | details |
| TissueCFM000273 | nucleocytoplasmic transport Ubiquitin_Proteasome_system, DUB: USP apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis unsaturated, even numbered fatty acid β-oxidation thiol-dependent ubiquitin-specific protease activity fatty acid β-oxidation II (peroxisome) sesaminol glucoside biosynthesis curcumin glucoside biosynthesis RNA transport quercetin gentiotetraside biosynthesis protein deubiquitination transferase activity, transferring hexosyl groups very long chain fatty acid biosynthesis II small GTPase mediated signal transduction ubiquitin-dependent protein catabolic process | details |
| TissueCFM000279 | Ubiquitin_Proteasome_system, DUB: USP protein deubiquitination ubiquitin-dependent protein catabolic process Transcription_related, Transcription regulator: TRAF thiol-dependent ubiquitinyl hydrolase activity thiol-dependent ubiquitin-specific protease activity ribosome biogenesis mRNA splicing, via spliceosome U2 snRNP precatalytic spliceosome U12-type spliceosomal complex Ubiquitin_Proteasome_system, E3 adaptor: BTB catalytic step 2 spliceosome Plant hormone signal transduction Spliceosome | details |
| TissueCFM000308 | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding spliceosomal complex assembly positive regulation of transcription from RNA polymerase II promoter methylerythritol phosphate pathway I methylerythritol phosphate pathway II Transcription_related, Transcription factor: M-type U12-type spliceosomal complex U2-type prespliceosome U2 snRNP Thiamine metabolism | details |
| TissueCFM000488 | methylerythritol phosphate pathway I methylerythritol phosphate pathway II hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-GATA Thiamine metabolism | details |
| TissueCFM000759 | Proteasome cytosolic proteasome complex nuclear proteasome complex positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex TBP-class protein binding proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process phosphate acquisition positive regulation of circadian rhythm response to far red light Circadian rhythm red, far-red light phototransduction spliceosomal complex assembly U2-type prespliceosome U12-type spliceosomal complex U2 snRNP proteasome complex triglyceride lipase activity protein deubiquitination thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM000856 | Retinol metabolism phosphate acquisition zinc II ion transmembrane transport | details |
| TissueCFM000859 | Glutathione metabolism secologanin and strictosidine biosynthesis toxin catabolic process cellular metabolic process glutathione metabolic process glutathione transferase activity lyase activity | details |
| TissueCFM000878 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, DUB: USP U2-type prespliceosome U12-type spliceosomal complex U2 snRNP xyloglucan metabolic process protein deubiquitination potassium ion transmembrane transport cell wall biogenesis cytoplasmic translation spliceosomal complex assembly potassium ion transmembrane transporter activity thiol-dependent ubiquitinyl hydrolase activity xyloglucan:xyloglucosyl transferase activity mRNA binding catalytic step 2 spliceosome ubiquitin-dependent protein catabolic process | details |
| TissueCFM000914 | mRNA export from nucleus in response to heat stress recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex positive regulation of translational initiation methylerythritol phosphate pathway I methylerythritol phosphate pathway II transcription initiation from RNA polymerase II promoter nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay DNA-directed RNA polymerase II, core complex cytoplasmic mRNA processing body single-stranded RNA binding Thiamine metabolism translation initiation factor binding single-stranded DNA binding DNA-directed RNA polymerase activity | details |
| TissueCFM001133 | ubiquitin-dependent protein catabolic process mitochondrial envelope mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) proteasome core complex, alpha-subunit complex protein localization to organelle interstrand cross-link repair nucleocytoplasmic transport protein transmembrane transport 1,3-beta-D-glucan synthase complex Oxidative phosphorylation hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1,3-β-D-glucan biosynthesis apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis unsaturated, even numbered fatty acid β-oxidation Transcription_related, Transcription regulator: SET Ubiquitin_Proteasome_system, DUB: USP (1->3)-beta-D-glucan biosynthetic process Fanconi anemia pathway nuclease activity 1,3-beta-D-glucan synthase activity thiol-dependent ubiquitin-specific protease activity protein channel activity threonine-type endopeptidase activity hydrogen ion transmembrane transporter activity fatty acid β-oxidation II (peroxisome) sesaminol glucoside biosynthesis curcumin glucoside biosynthesis Proteasome cytochrome-c oxidase activity | details |
| TissueCFM001164 | Transcription_related, Transcription regulator: MBF1 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: USP 1,3-beta-D-glucan synthase complex cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides regulation of nucleic acid-templated transcription interstrand cross-link repair positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process thiol-dependent ubiquitin-specific protease activity nuclease activity 1,3-beta-D-glucan synthase activity proteasome-activating ATPase activity transcription coactivator activity TBP-class protein binding (1->3)-beta-D-glucan biosynthetic process protein deubiquitination ER-associated ubiquitin-dependent protein catabolic process Fanconi anemia pathway Proteasome nucleic acid phosphodiester bond hydrolysis response to stress ubiquitin-dependent protein catabolic process unfolded protein binding | details |
| TissueCFM001253 | etioplast membrane integral component of chloroplast outer membrane pore complex Cellular senescence FoxO signaling pathway histone arginine methylation peptidyl-arginine methylation, to asymmetrical-dimethyl arginine regulation of ion transmembrane transport voltage-gated cation channel activity porin activity protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) scopoletin biosynthesis umbelliferone biosynthesis DNA replication DNA metabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001710 | ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: USP protein deubiquitination interstrand cross-link repair 1,3-β-D-glucan biosynthesis (1->3)-beta-D-glucan biosynthetic process hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Fanconi anemia pathway Proteasome thiol-dependent ubiquitin-specific protease activity nuclease activity thiol-dependent ubiquitinyl hydrolase activity 1,3-beta-D-glucan synthase activity 1,3-beta-D-glucan synthase complex proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |