TissueCFM000081's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosol | 0.004836837 | GO:0005829 |
| protein complex assembly | 0.006848895 | GO:0006461 |
| protein import into mitochondrial intermembrane space | 0.006848895 | GO:0045041 |
| response to fructose | 0.006848895 | GO:0009750 |
| mitochondrial fusion | 0.006848895 | GO:0008053 |
| mitochondrial protein processing | 0.006848895 | GO:0034982 |
| regulation of abscisic acid biosynthetic process | 0.006848895 | GO:0010115 |
| tRNA methylthiolation | 0.006848895 | GO:0035600 |
| cristae formation | 0.007101613 | GO:0042407 |
| abscisic acid biosynthetic process | 0.007101613 | GO:0009688 |
| proline biosynthetic process | 0.009584629 | GO:0006561 |
| caffeoyl-CoA O-methyltransferase activity | 0.014704985 | GO:0042409 |
| xanthoxin dehydrogenase activity | 0.014704985 | GO:0010301 |
| N6-threonylcarbomyladenosine methylthiotransferase activity | 0.014704985 | GO:0035598 |
| abscisic acid biosynthesis | 0.020404562 | plantCyc |
| chrysoeriol biosynthesis | 0.020404562 | plantCyc |
| gossypetin metabolism | 0.020404562 | plantCyc |
| methylquercetin biosynthesis | 0.020404562 | plantCyc |
| polymethylated quercetin biosynthesis | 0.020404562 | plantCyc |
| quercetin sulfate biosynthesis | 0.020404562 | plantCyc |
| scopoletin biosynthesis | 0.020404562 | plantCyc |
| 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | 0.022048679 | GO:0004316 |
| Phenylalanine metabolism | 0.034417436 | KEGG pathway |
| chlorogenic acid biosynthesis I | 0.039743515 | plantCyc |
| Carotenoid biosynthesis | 0.040461091 | KEGG pathway |
| response to heat | 0.040543307 | GO:0009408 |
| syringetin biosynthesis | 0.045025212 | plantCyc |
| protein peptidyl-prolyl isomerization | 0.045092591 | GO:0000413 |
| response to water deprivation | 0.046496143 | GO:0009414 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000447 | AT1G67990 (4.00E-61) | ATTSM1|TAPETUM-SPECIFIC METHYLTRANSFERASE 1 |
| CRO_T001235 | AT1G07450 (4.00E-17) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T013765 | AT1G24460 (2.00E-67) | TNO1|TGN-localized SYP41 interacting protein |
| CRO_T020742 | AT2G03470 (2.00E-15) | ELM2 domain-containing protein |
| CRO_T025405 | AT3G08000 (0.00000001) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T025599 | AT1G05970 (1.00E-45) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T026068 | AT4G10710 (0) | SPT16|global transcription factor C |
| CRO_T027291 | AT1G07510 (0) | ftsh10|FTSH protease 10 |
| CRO_T027949 | AT1G72090 (0) | Methylthiotransferase |
| CRO_T028087 | AT1G49760 (0) | PAB8|poly(A) binding protein 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000514 | L-homoserine biosynthesis anaphase-promoting complex binding ubiquitin-protein transferase activator activity aspartate kinase activity L-lysine biosynthesis VI amino acid binding 2-Oxocarboxylic acid metabolism Ubiquitin mediated proteolysis cellular amino acid biosynthetic process regulation of catalytic activity Ubiquitin_Proteasome_system, E3 adaptor: DWD vesicle-mediated transport | details |
| TissueCFM000524 | centromere complex assembly lysine biosynthetic process via aminoadipic acid acyl carrier protein metabolism biotin biosynthesis from 8-amino-7-oxononanoate I kinetochore biotin biosynthetic process Biotin metabolism Pantothenate and CoA biosynthesis PPAR signaling pathway biotin synthase activity holo-[acyl-carrier-protein] synthase activity anaphase-promoting complex binding ubiquitin-protein transferase activator activity regulation of catalytic activity zinc ion binding 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding Ubiquitin mediated proteolysis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000727 | inosine-5'-phosphate biosynthesis II phosphoribosylaminoimidazole carboxylase activity phosphoribosylaminoimidazolesuccinocarboxamide synthase activity adenine biosynthetic process 'de novo' IMP biosynthetic process DNA-templated transcription, initiation O-acyltransferase activity Basal transcription factors Glycerophospholipid metabolism response to auxin lipid metabolic process | details |
| TissueCFM000985 | caffeoyl-CoA O-methyltransferase activity mannose-1-phosphate guanylyltransferase (GDP) activity chrysoeriol biosynthesis GDP-glucose biosynthesis GDP-mannose biosynthesis gossypetin metabolism methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis scopoletin biosynthesis UDP-D-galacturonate biosynthesis II (from D-galacturonate) Phenylalanine metabolism Fructose and mannose metabolism L-ascorbate biosynthesis I (L-galactose pathway) phosphotransferase activity, alcohol group as acceptor chlorogenic acid biosynthesis I Amino sugar and nucleotide sugar metabolism syringetin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Phenylpropanoid biosynthesis microtubule-based movement biosynthetic process ribosome biogenesis | details |
| TissueCFM001185 | protein import into mitochondrial intermembrane space mitochondrial protein processing mitochondrial fusion protein complex assembly cristae formation Hedgehog signaling pathway Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box cell division ABC transporters Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc mRNA surveillance pathway | details |
| TissueCFM001195 | abscisic acid biosynthesis regulation of abscisic acid biosynthetic process response to fructose abscisic acid biosynthetic process proline biosynthetic process xanthoxin dehydrogenase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Carotenoid biosynthesis response to heat mRNA splicing, via spliceosome microtubule-based movement response to water deprivation heterocyclic compound binding organic cyclic compound binding microtubule motor activity ATPase activity microtubule binding kinesin complex spliceosomal complex microtubule Spliceosome | details |
| TissueCFM001269 | L-homoserine biosynthesis L-lysine biosynthesis VI tRNA methylthiolation N6-threonylcarbomyladenosine methylthiotransferase activity Arp2/3 complex-mediated actin nucleation aspartate kinase activity Arp2/3 protein complex cellular amino acid biosynthetic process amino acid binding 4 iron, 4 sulfur cluster binding 2-Oxocarboxylic acid metabolism Endocytosis RNA transport | details |
| TissueCFM001722 | bundle sheath cell fate specification diacylglycerol and triacylglycerol biosynthesis N-Glycan biosynthesis Transcription_related, Transcription regulator: GNAT leaf development N-terminal protein amino acid acetylation Transcription_related, Transcription factor: GRAS N-acetyltransferase activity | details |
| TissueCFM001817 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity ubiquitin-protein transferase activator activity anaphase-promoting complex binding glucose metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) glycolytic process regulation of catalytic activity ATP-dependent peptidase activity metalloendopeptidase activity NADP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD NAD binding Ubiquitin mediated proteolysis | details |
| TissueCFM001818 | protein import into mitochondrial intermembrane space mitochondrial protein processing protein complex assembly mitochondrial fusion cristae formation ATP-dependent peptidase activity metalloendopeptidase activity Transcription_related, Transcription regulator: SWI/SNF-SWI3 mitochondrial inner membrane chloroplast thylakoid membrane glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glucose metabolic process retrograde vesicle-mediated transport, Golgi to ER SNARE interactions in vesicular transport gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) spermine and spermidine degradation III sucrose biosynthesis I (from photosynthesis) cell division ER to Golgi vesicle-mediated transport glycolytic process DNA binding zinc ion binding NADP binding SNARE complex | details |
Expression profiles
 Show details about module gene expression profiling |