TissueCFM001185's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein import into mitochondrial intermembrane space | 0.002413564 | GO:0045041 |
| mitochondrial protein processing | 0.002413564 | GO:0034982 |
| mitochondrial fusion | 0.002413564 | GO:0008053 |
| protein complex assembly | 0.002413564 | GO:0006461 |
| cristae formation | 0.002574278 | GO:0042407 |
| Hedgehog signaling pathway | 0.011815964 | KEGG pathway |
| Transcription_related, Transcription regulator: TRAF | 0.015168282 | TF family |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.015168282 | ubs family |
| cell division | 0.022994883 | GO:0051301 |
| ABC transporters | 0.025060736 | KEGG pathway |
| Transcription_related, Transcription factor: MYB-related | 0.026916072 | TF family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.029232331 | ubs family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.029801894 | cazy family |
| mRNA surveillance pathway | 0.041124329 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000644 | AT1G14970 (0) | O-fucosyltransferase family protein |
| CRO_T006093 | AT1G27595 (6.00E-99) | |
| CRO_T011012 | AT1G07510 (0) | ftsh10|FTSH protease 10 |
| CRO_T019200 | AT1G01640 (4.00E-12) | BTB/POZ domain-containing protein |
| CRO_T019382 | AT2G36910 (0) | ABCB1|ATP-binding cassette B1; ATPGP1|P GLYCOPROTEIN1; PGP1|P-GLYCOPROTEIN 1 |
| CRO_T028087 | AT1G49760 (0) | PAB8|poly(A) binding protein 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000081 | cytosol protein complex assembly protein import into mitochondrial intermembrane space response to fructose mitochondrial fusion mitochondrial protein processing regulation of abscisic acid biosynthetic process tRNA methylthiolation cristae formation abscisic acid biosynthetic process proline biosynthetic process caffeoyl-CoA O-methyltransferase activity xanthoxin dehydrogenase activity N6-threonylcarbomyladenosine methylthiotransferase activity abscisic acid biosynthesis chrysoeriol biosynthesis gossypetin metabolism methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis scopoletin biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Phenylalanine metabolism chlorogenic acid biosynthesis I Carotenoid biosynthesis response to heat syringetin biosynthesis protein peptidyl-prolyl isomerization response to water deprivation | details |
| TissueCFM001184 | Hedgehog signaling pathway Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box ABC transporters Transcription_related, Transcription factor: MYB-related mRNA surveillance pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc microtubule-based movement S-adenosylmethionine-dependent methyltransferase activity microtubule motor activity ATPase activity ATPase activity, coupled to transmembrane movement of substances transferase activity, transferring glycosyl groups microtubule binding | details |
| TissueCFM001269 | L-homoserine biosynthesis L-lysine biosynthesis VI tRNA methylthiolation N6-threonylcarbomyladenosine methylthiotransferase activity Arp2/3 complex-mediated actin nucleation aspartate kinase activity Arp2/3 protein complex cellular amino acid biosynthetic process amino acid binding 4 iron, 4 sulfur cluster binding 2-Oxocarboxylic acid metabolism Endocytosis RNA transport | details |
| TissueCFM001575 | Transcription_related, Transcription regulator: GNAT nuclease activity N-acetyltransferase activity N-terminal protein amino acid acetylation Base excision repair mRNA surveillance pathway cellular process | details |
| TissueCFM001599 | Terpenoid backbone biosynthesis mevalonate pathway I calcium:proton antiporter activity farnesol dehydrogenase activity hydroxymethylglutaryl-CoA reductase (NADPH) activity coenzyme A metabolic process transmembrane transport farnesol metabolic process integral component of membrane Transcription_related, Transcription factor: MYB-related ABC transporters negative regulation of abscisic acid-activated signaling pathway isoprenoid biosynthetic process calcium ion transmembrane transport plasma membrane NADP binding coenzyme binding oxidation-reduction process | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
| TissueCFM001717 | farnesol dehydrogenase activity farnesol metabolic process transmembrane transport ABC transporters Terpenoid backbone biosynthesis negative regulation of abscisic acid-activated signaling pathway Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP cellular protein metabolic process cysteine-type peptidase activity coenzyme binding | details |
| TissueCFM001763 | N-acetyltransferase activity N-terminal protein amino acid acetylation U5 snRNP Transcription_related, Transcription regulator: GNAT Transcription_related, Transcription regulator: Jumonji mRNA surveillance pathway formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001802 | Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase tissue development regulation of response to stimulus plant organ development cellular response to stimulus anatomical structure morphogenesis response to organic substance response to bacterium defense response to other organism response to osmotic stress MAPK signaling pathway - plant mRNA surveillance pathway single-organism cellular process regulation of cellular process | details |
| TissueCFM001805 | transmembrane transport ABC transporters cellular protein metabolic process Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP cysteine-type peptidase activity | details |
| TissueCFM001818 | protein import into mitochondrial intermembrane space mitochondrial protein processing protein complex assembly mitochondrial fusion cristae formation ATP-dependent peptidase activity metalloendopeptidase activity Transcription_related, Transcription regulator: SWI/SNF-SWI3 mitochondrial inner membrane chloroplast thylakoid membrane glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glucose metabolic process retrograde vesicle-mediated transport, Golgi to ER SNARE interactions in vesicular transport gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) spermine and spermidine degradation III sucrose biosynthesis I (from photosynthesis) cell division ER to Golgi vesicle-mediated transport glycolytic process DNA binding zinc ion binding NADP binding SNARE complex | details |
Expression profiles
 Show details about module gene expression profiling |