TissueCFM000128's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: HB | 0.030588431 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000992 | - | - |
| CRO_T001889 | - | - |
| CRO_T005009 | AT1G79310 (9.00E-20) | AtMC7|metacaspase 7; AtMCP2a|metacaspase 2a |
| CRO_T006967 | - | - |
| CRO_T010337 | - | - |
| CRO_T013381 | - | - |
| CRO_T015286 | - | - |
| CRO_T022691 | - | - |
| CRO_T023216 | - | - |
| CRO_T026634 | - | - |
| CRO_T027671 | - | - |
| CRO_T028395 | - | - |
| CRO_T028937 | AT5G54310 (2.00E-15) | AGD5|ARF-GAP domain 5; NEV|NEVERSHED |
| CRO_T033224 | AT3G18010 (4.00E-24) | WOX1|WUSCHEL related homeobox 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000047 | post-embryonic root development Human papillomavirus infection MAPK signaling pathway - yeast Pyruvate metabolism | details |
| TissueCFM000115 | ent-kaurene biosynthesis I multi-organism process metabolic process arginine biosynthetic process 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis root development Transcription_related, Transcription factor: bHLH terpene synthase activity N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | details |
| TissueCFM000129 | post-embryonic root development MAPK signaling pathway - yeast Propanoate metabolism protein domain specific binding Transcription_related, Transcription factor: FAR1 | details |
| TissueCFM000130 | vitamin E biosynthesis (tocopherols) | details |
| TissueCFM000159 | Cytochrome_P450, Cytochrome P450: CYP83B 4-hydroxy-tetrahydrodipicolinate synthase L-lysine biosynthesis VI salvigenin biosynthesis diaminopimelate biosynthetic process lysine biosynthetic process via diaminopimelate | details |
| TissueCFM000271 | carboxypeptidase activity histone H3-K36 methylation histone H3-K4 methylation negative regulation of flower development | details |
| TissueCFM000440 | post-embryonic root development DNA recombination MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000445 | Mannose type O-glycan biosyntheis post-embryonic root development hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MAPK signaling pathway - yeast | details |
| TissueCFM000506 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 L-citrulline degradation cyclin-dependent protein serine/threonine kinase activity RNA polymerase II carboxy-terminal domain kinase activity ornithine carbamoyltransferase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | details |
| TissueCFM000562 | details | |
| TissueCFM000592 | post-embryonic root development protein domain specific binding MAPK signaling pathway - yeast MAPK signaling pathway - plant | details |
| TissueCFM000684 | homogalacturonan degradation Plant hormone signal transduction hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions cysteine-type endopeptidase activity amino acid transmembrane transporter activity pectinesterase activity aspartyl esterase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 cell wall modification amino acid transmembrane transport lignin biosynthetic process pectin catabolic process lignin catabolic process proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001086 | ABC transporters auxin influx transmembrane transporter activity taurine-transporting ATPase activity root hair elongation gravitropism amine transport basipetal auxin transport auxin efflux auxin influx xenobiotic transport auxin efflux transmembrane transporter activity xenobiotic-transporting ATPase activity Transcription_related, Transcription factor: MYB | details |
| TissueCFM001283 | transport | details |
| TissueCFM001706 | Sulfur relay system coumarin biosynthesis (via 2-coumarate) molybdenum cofactor biosynthesis URM1 activating enzyme activity protein adenylyltransferase activity thiosulfate sulfurtransferase activity protein urmylation protein adenylylation tRNA wobble position uridine thiolation enzyme active site formation via cysteine modification to L-cysteine persulfide Mo-molybdopterin cofactor biosynthetic process NAD+ ADP-ribosyltransferase activity glycosyl compound metabolic process cellulose catabolic process lignin catabolic process lignin biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Ubiquitin_Proteasome_system, E1: ThiF cysteine-type endopeptidase activity cellulase activity beta-glucosidase activity hydroquinone:oxygen oxidoreductase activity extracellular space Lysosome Transcription_related, Transcription factor: C2H2 oxidoreductase activity, oxidizing metal ions Starch and sucrose metabolism | details |
| TissueCFM001734 | apoplast coumarin biosynthesis (via 2-coumarate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Starch and sucrose metabolism lignin catabolic process cell wall biogenesis xyloglucan metabolic process glycosyl compound metabolic process lignin biosynthetic process xyloglucan:xyloglucosyl transferase activity hydroquinone:oxygen oxidoreductase activity beta-glucosidase activity oxidoreductase activity, oxidizing metal ions cell wall | details |
Expression profiles
 Show details about module gene expression profiling |