TissueCFM000158's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001079251 | cazy family |
| ER to Golgi transport vesicle | 0.004723347 | GO:0030134 |
| trans-lycopene biosynthesis II (plants) | 0.004958527 | plantCyc |
| pentose phosphate pathway (oxidative branch) I | 0.004958527 | plantCyc |
| oxidation-reduction process | 0.018751092 | GO:0055114 |
| pentose-phosphate shunt | 0.018751092 | GO:0006098 |
| glucose metabolic process | 0.018751092 | GO:0006006 |
| glucose-6-phosphate dehydrogenase activity | 0.036340626 | GO:0004345 |
| cytoplasm | 0.046636969 | GO:0005737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008083 | AT1G34140 (2.00E-35) | PAB1|poly(A) binding protein 1 |
| CRO_T010834 | AT3G07680 (2.00E-87) | p24beta2|p24 subfamily beta 2 |
| CRO_T012263 | AT1G62720 (1.00E-47) | NG1|novel gene 1 |
| CRO_T021681 | AT1G73680 (8.00E-154) | ALPHA DOX2|alpha dioxygenase; alpha-DOX2|alpha-dioxygenase 2 |
| CRO_T026564 | AT3G23510 (0) | Cyclopropane-fatty-acyl-phospholipid synthase |
| CRO_T030687 | AT5G61990 (1.00E-37) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T032697 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000269 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) structural constituent of ribosome cytoplasmic translation poly(A) RNA binding Ribosome mitotic recombination-dependent replication fork processing uridylyltransferase activity chromosome organization involved in meiotic cell cycle DNA recombinase assembly reciprocal meiotic recombination response to ionizing radiation mitotic recombination strand invasion spliceosomal complex assembly cytosolic large ribosomal subunit translation potassium ion binding recombinase activity pyruvate kinase activity DNA-dependent ATPase activity four-way junction DNA binding Rho guanyl-nucleotide exchange factor activity endodeoxyribonuclease activity Transcription_related, Transcription factor: LOB | details |
| TissueCFM000548 | trans-lycopene biosynthesis II (plants) anaphase-promoting complex Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III regulation of mitotic metaphase/anaphase transition cytoplasm ribosomal large subunit assembly cytosolic large ribosomal subunit | details |
| TissueCFM000693 | pentose phosphate pathway (oxidative branch) I UDP-glucose biosynthesis ER to Golgi transport vesicle stachyose degradation sucrose biosynthesis II uridylyltransferase activity glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: LOB Rho guanyl-nucleotide exchange factor activity structural constituent of ribosome pentose-phosphate shunt maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) glucose metabolic process poly(A) RNA binding cytoplasmic translation DNA metabolic process | details |
| TissueCFM000694 | pentose phosphate pathway (oxidative branch) I ER to Golgi transport vesicle glucose-6-phosphate dehydrogenase activity second spliceosomal transesterification activity glucan catabolic process RNA splicing, via transesterification reactions Rho guanyl-nucleotide exchange factor activity scopolin beta-glucosidase activity pentose-phosphate shunt glucose metabolic process hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |