TissueCFM000694's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pentose phosphate pathway (oxidative branch) I | 0.004600676 | plantCyc |
| ER to Golgi transport vesicle | 0.016701556 | GO:0030134 |
| glucose-6-phosphate dehydrogenase activity | 0.038247722 | GO:0004345 |
| second spliceosomal transesterification activity | 0.038247722 | GO:0000386 |
| glucan catabolic process | 0.039337617 | GO:0009251 |
| RNA splicing, via transesterification reactions | 0.039337617 | GO:0000375 |
| Rho guanyl-nucleotide exchange factor activity | 0.04138365 | GO:0005089 |
| scopolin beta-glucosidase activity | 0.04138365 | GO:0102483 |
| pentose-phosphate shunt | 0.042087724 | GO:0006098 |
| glucose metabolic process | 0.042087724 | GO:0006006 |
| hydrolase activity | 0.046835591 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009815 | AT5G02010 (1.00E-176) | ROPGEF7|ROP (rho of plants) guanine nucleotide exchange factor 7 |
| CRO_T010834 | AT3G07680 (2.00E-87) | p24beta2|p24 subfamily beta 2 |
| CRO_T011370 | AT3G47000 (0) | Glycosyl hydrolase family protein |
| CRO_T012133 | AT2G33400 (1.00E-10) | unknown protein |
| CRO_T012263 | AT1G62720 (1.00E-47) | NG1|novel gene 1 |
| CRO_T017073 | AT2G39950 (1.00E-11) | unknown protein |
| CRO_T019770 | - | - |
| CRO_T021262 | AT2G24490 (3.00E-41) | ROR1|SUPPRESSOR OF ROS1; RPA2|replicon protein A2 |
| CRO_T022877 | AT3G18820 (5.00E-79) | ATRAB7B|RAB GTPase homolog G3F |
| CRO_T023390 | AT1G36340 (3.00E-21) | UBC31|ubiquitin-conjugating enzyme 31 |
| CRO_T027907 | AT3G45950 (3.00E-108) | Pre-mRNA splicing Prp18-interacting factor |
| CRO_T028273 | AT2G14050 (5.00E-173) | MCM9|minichromosome maintenance 9 |
| CRO_T032697 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000158 | formation of glycosidic bonds, GlycosylTransferases: GTnc ER to Golgi transport vesicle trans-lycopene biosynthesis II (plants) pentose phosphate pathway (oxidative branch) I oxidation-reduction process pentose-phosphate shunt glucose metabolic process glucose-6-phosphate dehydrogenase activity cytoplasm | details |
| TissueCFM000269 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) structural constituent of ribosome cytoplasmic translation poly(A) RNA binding Ribosome mitotic recombination-dependent replication fork processing uridylyltransferase activity chromosome organization involved in meiotic cell cycle DNA recombinase assembly reciprocal meiotic recombination response to ionizing radiation mitotic recombination strand invasion spliceosomal complex assembly cytosolic large ribosomal subunit translation potassium ion binding recombinase activity pyruvate kinase activity DNA-dependent ATPase activity four-way junction DNA binding Rho guanyl-nucleotide exchange factor activity endodeoxyribonuclease activity Transcription_related, Transcription factor: LOB | details |
| TissueCFM000291 | Ubiquitin_Proteasome_system, E3: UBR-box RNA splicing, via transesterification reactions protein N-linked glycosylation via asparagine second spliceosomal transesterification activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) Ino80 complex ADP binding proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism plant-type cell wall organization unidimensional cell growth ATP synthesis coupled proton transport spliceosomal complex | details |
| TissueCFM000693 | pentose phosphate pathway (oxidative branch) I UDP-glucose biosynthesis ER to Golgi transport vesicle stachyose degradation sucrose biosynthesis II uridylyltransferase activity glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: LOB Rho guanyl-nucleotide exchange factor activity structural constituent of ribosome pentose-phosphate shunt maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) glucose metabolic process poly(A) RNA binding cytoplasmic translation DNA metabolic process | details |
| TissueCFM000830 | pyruvate kinase activity potassium ion binding Rho guanyl-nucleotide exchange factor activity DNA metabolic process glycolytic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) positive regulation of GTPase activity cytoplasmic translation Cellular senescence poly(A) RNA binding Ubiquitin_Proteasome_system, E3 adaptor: DWD DNA replication | details |
| TissueCFM001253 | etioplast membrane integral component of chloroplast outer membrane pore complex Cellular senescence FoxO signaling pathway histone arginine methylation peptidyl-arginine methylation, to asymmetrical-dimethyl arginine regulation of ion transmembrane transport voltage-gated cation channel activity porin activity protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) scopoletin biosynthesis umbelliferone biosynthesis DNA replication DNA metabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001421 | Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glucan catabolic process RNA splicing, via transesterification reactions scopolin beta-glucosidase activity Rho guanyl-nucleotide exchange factor activity second spliceosomal transesterification activity DNA metabolic process positive regulation of GTPase activity beta-glucosidase activity spliceosomal complex DNA replication | details |
Expression profiles
 Show details about module gene expression profiling |