TissueCFM000548's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| trans-lycopene biosynthesis II (plants) | 0.002834156 | plantCyc |
| anaphase-promoting complex | 0.010339733 | GO:0005680 |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.010624943 | kinase family |
| regulation of mitotic metaphase/anaphase transition | 0.015634831 | GO:0030071 |
| cytoplasm | 0.024649171 | GO:0005737 |
| ribosomal large subunit assembly | 0.035123829 | GO:0000027 |
| cytosolic large ribosomal subunit | 0.04161083 | GO:0022625 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006690 | AT2G26730 (2.00E-85) | Leucine-rich repeat protein kinase family protein |
| CRO_T008083 | AT1G34140 (2.00E-35) | PAB1|poly(A) binding protein 1 |
| CRO_T025431 | AT1G61580 (9.00E-179) | ARP2|ARABIDOPSIS RIBOSOMAL PROTEIN 2; RPL3B|R-protein L3 B |
| CRO_T026564 | AT3G23510 (0) | Cyclopropane-fatty-acyl-phospholipid synthase |
| CRO_T028150 | - | - |
| CRO_T030687 | AT5G61990 (1.00E-37) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000158 | formation of glycosidic bonds, GlycosylTransferases: GTnc ER to Golgi transport vesicle trans-lycopene biosynthesis II (plants) pentose phosphate pathway (oxidative branch) I oxidation-reduction process pentose-phosphate shunt glucose metabolic process glucose-6-phosphate dehydrogenase activity cytoplasm | details |
| TissueCFM000693 | pentose phosphate pathway (oxidative branch) I UDP-glucose biosynthesis ER to Golgi transport vesicle stachyose degradation sucrose biosynthesis II uridylyltransferase activity glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: LOB Rho guanyl-nucleotide exchange factor activity structural constituent of ribosome pentose-phosphate shunt maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) glucose metabolic process poly(A) RNA binding cytoplasmic translation DNA metabolic process | details |
| TissueCFM000927 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) protein N-glycosylation (eukaryotic, high mannose) regulation of mitotic metaphase/anaphase transition oligosaccharide-lipid intermediate biosynthetic process protein N-linked glycosylation Transcription_related, Transcription factor: LOB anaphase-promoting complex DNA biosynthetic process DNA-directed DNA polymerase activity nucleotidyltransferase activity biosynthetic process DNA replication Fructose and mannose metabolism N-Glycan biosynthesis Ubiquitin mediated proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |