TissueCFM000173's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: TCP | 0.004955377 | TF family |
| Pyrimidine metabolism | 0.006191018 | KEGG pathway |
| cytidylate kinase activity | 0.007082717 | GO:0004127 |
| uridylate kinase activity | 0.007082717 | GO:0009041 |
| CMP phosphorylation | 0.007793928 | plantCyc |
| UTP and CTP de novo biosynthesis | 0.007793928 | plantCyc |
| 'de novo' pyrimidine nucleobase biosynthetic process | 0.010595305 | GO:0006207 |
| regulation of leaf development | 0.010595305 | GO:2000024 |
| pyrimidine nucleotide biosynthetic process | 0.010595305 | GO:0006221 |
| secondary shoot formation | 0.010595305 | GO:0010223 |
| nucleotide phosphorylation | 0.012324528 | GO:0046939 |
| pyrimidine ribonucleotides interconversion | 0.014259339 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006559 | AT1G35560 (8.00E-24) | TCP23|TCP domain protein 23 |
| CRO_T007075 | AT1G20160 (5.00E-126) | ATSBT5.2|Subtilisin-like serine endopeptidase family protein |
| CRO_T026186 | AT3G60961 (2.00E-37) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T026268 | AT5G19840 (4.00E-15) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T030110 | AT2G03440 (5.00E-08) | NRP1|nodulin-related protein 1 |
| CRO_T033425 | AT2G47490 (5.00E-17) | ATNDT1|NAD+ TRANSPORTER 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000567 | phosphopantothenate biosynthesis I nuclear origin of replication recognition complex U1 snRNP U1 snRNA binding 3'-tRNA processing endoribonuclease activity pantothenate kinase activity DNA replication origin binding snRNA stem-loop binding Transcription_related, Transcription factor: TCP tRNA 3'-trailer cleavage, endonucleolytic red or far-red light signaling pathway regulation of leaf development coenzyme A biosynthetic process DNA replication initiation Pantothenate and CoA biosynthesis Cell cycle mRNA splicing, via spliceosome | details |
| TissueCFM000690 | Histidine metabolism histidine decarboxylase activity choline biosynthesis I phosphatidylethanolamine biosynthesis II response to very low light intensity stimulus ethanolamine metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) carboxylic acid metabolic process vegetative to reproductive phase transition of meristem ribosomal large subunit assembly | details |
| TissueCFM001013 | Transcription_related, Transcription factor: TCP regulation of leaf development secondary shoot formation RNA modification isomerase activity vacuolar membrane plant-type cell wall apoplast Ribosome serine-type endopeptidase activity | details |
| TissueCFM001101 | Transcription_related, Transcription factor: TCP pyridoxal kinase activity syntaxin binding fatty-acyl-CoA synthase activity soluble NSF attachment protein activity DNA replication origin binding nickel cation binding actin filament polymerization pyridoxal 5'-phosphate salvage pyridoxal 5'-phosphate salvage I membrane fusion Arp2/3 complex-mediated actin nucleation jasmonic acid biosynthetic process regulation of leaf development Vitamin B6 metabolism DNA replication initiation nuclear origin of replication recognition complex nitrogen compound metabolic process Arp2/3 protein complex Cell cycle jasmonic acid biosynthesis triacylglycerol degradation actin binding | details |
| TissueCFM001109 | glycerol transport cellular water homeostasis water transport plasmodesma ion transmembrane transport | details |
| TissueCFM001542 | alpha-1,2-mannosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) Other types of O-glycan biosynthesis mannosylation ER-associated ubiquitin-dependent protein catabolic process N-Glycan biosynthesis Transcription_related, Transcription factor: Orphans | details |
Expression profiles
 Show details about module gene expression profiling |