TissueCFM000690's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Histidine metabolism | 0.000709167 | KEGG pathway |
| histidine decarboxylase activity | 0.002955301 | GO:0004398 |
| choline biosynthesis I | 0.003720379 | plantCyc |
| phosphatidylethanolamine biosynthesis II | 0.003720379 | plantCyc |
| response to very low light intensity stimulus | 0.003909574 | GO:0055122 |
| ethanolamine metabolic process | 0.003909574 | GO:0006580 |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.005861762 | GO:0000463 |
| carboxylic acid metabolic process | 0.005861762 | GO:0019752 |
| vegetative to reproductive phase transition of meristem | 0.011707943 | GO:0010228 |
| ribosomal large subunit assembly | 0.011707943 | GO:0000027 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004536 | - | - |
| CRO_T004568 | AT1G43710 (0) | ATSDC1|serine decarboxylase 1; EMB1075|embryo defective 1075 |
| CRO_T006773 | AT1G06110 (4.00E-06) | SKIP16|SKP1/ASK-interacting protein 16 |
| CRO_T011500 | - | - |
| CRO_T024830 | AT3G23620 (1.00E-109) | Ribosomal RNA processing Brix domain protein |
| CRO_T030110 | AT2G03440 (5.00E-08) | NRP1|nodulin-related protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000173 | Transcription_related, Transcription factor: TCP Pyrimidine metabolism cytidylate kinase activity uridylate kinase activity CMP phosphorylation UTP and CTP de novo biosynthesis 'de novo' pyrimidine nucleobase biosynthetic process regulation of leaf development pyrimidine nucleotide biosynthetic process secondary shoot formation nucleotide phosphorylation pyrimidine ribonucleotides interconversion | details |
| TissueCFM001109 | glycerol transport cellular water homeostasis water transport plasmodesma ion transmembrane transport | details |
| TissueCFM001542 | alpha-1,2-mannosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) Other types of O-glycan biosynthesis mannosylation ER-associated ubiquitin-dependent protein catabolic process N-Glycan biosynthesis Transcription_related, Transcription factor: Orphans | details |
Expression profiles
 Show details about module gene expression profiling |