TissueCFM000184's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: Alfin-like | 0.009847074 | TF family |
| protein ubiquitination | 0.045147534 | GO:0016567 |
| ubiquitin-dependent protein catabolic process | 0.045147534 | GO:0006511 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001167 | - | - |
| CRO_T002687 | AT2G02470 (3.00E-60) | AL6|alfin-like 6 |
| CRO_T011664 | AT1G14900 (1.00E-13) | HMGA|high mobility group A |
| CRO_T014659 | - | - |
| CRO_T016241 | AT5G20910 (3.00E-21) | AIP2|ABI3-interacting protein 2 |
| CRO_T017336 | AT5G64600 (3.00E-47) | O-fucosyltransferase family protein |
| CRO_T031067 | AT3G07030 (6.00E-58) | Alba DNA/RNA-binding protein |
| CRO_T032255 | AT3G15750 (4.00E-29) | Essential protein Yae1, N-terminal |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000140 | respiratory electron transport chain Photosynthesis electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity chloroplast thylakoid membrane ubiquitin-dependent protein catabolic process protein ubiquitination | details |
| TissueCFM000185 | histone methyltransferase activity (H3-K27 specific) histone H3-K27 methylation DNA mediated transformation regulation of DNA replication pollen development Transcription_related, Transcription regulator: PHD formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000282 | histone methyltransferase activity (H3-K27 specific) regulation of DNA replication histone H3-K27 methylation DNA mediated transformation pollen development Transcription_related, Transcription regulator: PHD | details |
| TissueCFM000471 | details | |
| TissueCFM000489 | lysyl-tRNA aminoacylation flavin-containing compound metabolic process FAD diphosphatase activity lysine-tRNA ligase activity Transcription_related, Transcription factor: FAR1 nucleic acid binding phosphatase activity | details |
| TissueCFM000624 | Ubiquitin_Proteasome_system, DUB: ULP Transcription_related, Transcription factor: bZIP NEDD8-specific protease activity aerobic respiration Oxidative phosphorylation | details |
| TissueCFM000697 | positive regulation of translational elongation positive regulation of translational termination cell projection morphogenesis regulation of endosperm development translational frameshifting regulation of gene expression by genetic imprinting cytosolic proteasome complex polar nucleus nuclear proteasome complex chromatin silencing complex proteasome regulatory particle, base subcomplex histone methylation Proteasome positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity ribosome binding translation elongation factor activity translational initiation ubiquitin-dependent protein catabolic process | details |
| TissueCFM000974 | histone methyltransferase activity (H3-K27 specific) histone H3-K27 methylation regulation of DNA replication DNA mediated transformation pollen development Transcription_related, Transcription regulator: PHD Transcription_related, Transcription factor: HB vesicle-mediated transport intracellular protein transport | details |
| TissueCFM001082 | Transcription_related, Transcription factor: Alfin-like peroxisome organization pollen germination autophagosome assembly protein targeting to vacuole peroxisomal membrane pre-autophagosomal structure clathrin adaptor complex mitochondrial large ribosomal subunit large ribosomal subunit rRNA binding transmembrane receptor protein kinase activity nucleoplasm | details |
| TissueCFM001177 | lysyl-tRNA aminoacylation Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis molybdopterin synthase complex lysine-tRNA ligase activity Aminoacyl-tRNA biosynthesis RNA transport | details |
| TissueCFM001328 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K Transcription_related, Transcription factor: Alfin-like Herpes simplex infection Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, DUB: USP formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |