TissueCFM001082's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: Alfin-like | 0.001329237 | TF family |
| peroxisome organization | 0.027077862 | GO:0007031 |
| pollen germination | 0.030412228 | GO:0009846 |
| autophagosome assembly | 0.030412228 | GO:0000045 |
| protein targeting to vacuole | 0.030412228 | GO:0006623 |
| peroxisomal membrane | 0.031135303 | GO:0005778 |
| pre-autophagosomal structure | 0.031135303 | GO:0000407 |
| clathrin adaptor complex | 0.033709984 | GO:0030131 |
| mitochondrial large ribosomal subunit | 0.034985841 | GO:0005762 |
| large ribosomal subunit rRNA binding | 0.037201266 | GO:0070180 |
| transmembrane receptor protein kinase activity | 0.037201266 | GO:0019199 |
| nucleoplasm | 0.040389881 | GO:0005654 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000814 | AT1G17560 (5.00E-38) | HLL|HUELLENLOS |
| CRO_T001231 | AT5G11490 (0) | adaptin family protein |
| CRO_T002687 | AT2G02470 (3.00E-60) | AL6|alfin-like 6 |
| CRO_T002944 | - | - |
| CRO_T003787 | AT3G61710 (1.00E-62) | ATG6|AUTOPHAGY 6; BECLIN1|BECLIN1 |
| CRO_T006724 | AT2G45690 (4.00E-110) | ATPEX16|ARABIDOPSIS PEROXIN 16; PEX16|PEROXIN 16; SSE1|SHRUNKEN SEED 1 |
| CRO_T021426 | AT1G11400 (2.00E-27) | PYM|partner of Y14-MAGO |
| CRO_T021784 | AT3G05540 (1.00E-64) | Methionine sulfoxide reductase (MSS4-like) family protein |
| CRO_T033679 | AT1G60830 (1.00E-04) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000184 | Transcription_related, Transcription factor: Alfin-like protein ubiquitination ubiquitin-dependent protein catabolic process | details |
| TissueCFM000321 | hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I Transcription_related, Transcription factor: HSF regulation of photomorphogenesis response to red light peroxisome organization regulation of circadian rhythm response to blue light autophagosome assembly pollen germination ethylene-activated signaling pathway protein targeting to vacuole peroxisomal membrane pre-autophagosomal structure Apelin signaling pathway Peroxisome nucleoplasm RNA transport | details |
| TissueCFM000494 | homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 pectin biosynthetic process phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation 1-phosphatidylinositol 4-kinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism Inositol phosphate metabolism | details |
| TissueCFM000846 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc pyridoxamine-phosphate oxidase activity pyridoxal phosphate biosynthetic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex nucleoplasm calcium-dependent phospholipid binding RNA transport FMN binding response to stimulus | details |
| TissueCFM001225 | nucleotide binding ureide catabolic process purine nucleobase catabolic process allantoin catabolic process Spliceosome allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) ureidoglycine aminohydrolase activity molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding Transcription_related, Transcription factor: C3H | details |
| TissueCFM001328 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K Transcription_related, Transcription factor: Alfin-like Herpes simplex infection Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, DUB: USP formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001467 | Arp2/3 protein complex GPI-anchor transamidase complex trichome morphogenesis Arp2/3 complex-mediated actin nucleation attachment of GPI anchor to protein multidimensional cell growth CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Autophagy - yeast Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Glycerolipid metabolism | details |
| TissueCFM001661 | lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) inositol-1,4,5-trisphosphate 3-kinase activity RNA binding nucleotide binding sugar:proton symporter activity proton transport carbohydrate transport Inositol phosphate metabolism Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |