TissueCFM000205's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| quinone binding | 6.39E-07 | GO:0048038 |
| Oxidative phosphorylation | 4.05E-05 | KEGG pathway |
| chloroplast | 0.001844463 | GO:0009507 |
| integral component of membrane | 0.00696133 | GO:0016021 |
| oxidoreductase activity | 0.008919523 | GO:0016491 |
| photosynthesis, light reaction | 0.020424331 | GO:0019684 |
| cytochrome complex assembly | 0.020424331 | GO:0017004 |
| ATP synthesis coupled electron transport | 0.020424331 | GO:0042773 |
| Photosynthesis | 0.028320139 | KEGG pathway |
| NADH dehydrogenase (ubiquinone) activity | 0.039981433 | GO:0008137 |
| intracellular part | 0.046212156 | GO:0044424 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002666 | ATCG01040 (9.00E-15) | YCF5|Cytochrome C assembly protein |
| CRO_T009734 | - | - |
| CRO_T015176 | ATCG00890 (8.00E-43) | NDHB.1|NADH-Ubiquinone/plastoquinone (complex I) protein |
| CRO_T021359 | ATCG00890 (1.00E-24) | NDHB.1|NADH-Ubiquinone/plastoquinone (complex I) protein |
| CRO_T023960 | ATCG00890 (9.00E-31) | NDHB.1|NADH-Ubiquinone/plastoquinone (complex I) protein |
| CRO_T031077 | ATCG00540 (2.00E-15) | PETA|photosynthetic electron transfer A |
| CRO_T031756 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000101 | phytyl diphosphate biosynthesis geranylgeranyl reductase activity oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor FAD binding vacuolar proton-transporting V-type ATPase complex assembly endoplasmic reticulum-Golgi intermediate compartment membrane chlorophyll biosynthetic process COPII vesicle coat Porphyrin and chlorophyll metabolism Photosynthesis | details |
| TissueCFM000268 | oxidoreductase activity quinone binding photosystem II reaction center plastid chromosome transcription from plastid promoter alkaloid metabolic process chloroplast positive regulation of transcription, DNA-templated | details |
| TissueCFM000274 | photosynthesis, light reaction cellular metabolic process ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | details |
| TissueCFM001004 | photosynthesis, light reaction ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity transport Oxidative phosphorylation chloroplast thylakoid membrane cellular metabolic process Photosynthesis intracellular part | details |
Expression profiles
 Show details about module gene expression profiling |