TissueCFM000252's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytochrome-c oxidase activity | 1.19E-05 | GO:0004129 |
| hydrogen ion transmembrane transport | 0.00051219 | GO:1902600 |
| mitochondrion | 0.001723325 | GO:0005739 |
| aerobic respiration I (cytochrome c) | 0.009068097 | plantCyc |
| cytoplasmic, membrane-bounded vesicle | 0.027329033 | GO:0016023 |
| membrane part | 0.034365561 | GO:0044425 |
| Oxidative phosphorylation | 0.049998209 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001537 | AT1G20430 (2.00E-22) | unknown protein |
| CRO_T002101 | - | - |
| CRO_T014970 | AT4G28060 (1.00E-37) | Cytochrome c oxidase, subunit Vib family protein |
| CRO_T016188 | AT1G48440 (9.00E-18) | B-cell receptor-associated 31-like |
| CRO_T020689 | AT1G70990 (7.00E-06) | proline-rich family protein |
| CRO_T027278 | AT5G58005 (2.00E-44) | Cytochrome c oxidase, subunit Vib family protein |
| CRO_T029677 | AT3G02410 (7.00E-17) | ICME-LIKE2|Isoprenylcysteine methylesterase-like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000066 | post-embryonic root development protein domain specific binding MAPK signaling pathway - yeast Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: HB | details |
| TissueCFM000160 | esterified suberin biosynthesis phaseic acid biosynthesis Cytochrome_P450, Cytochrome P450: CYP87A | details |
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
| TissueCFM000445 | Mannose type O-glycan biosyntheis post-embryonic root development hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MAPK signaling pathway - yeast | details |
| TissueCFM000470 | nonphotochemical quenching mitochondrial electron transport, ubiquinol to cytochrome c toxin catabolic process glutathione metabolic process mitochondrial respiratory chain complex III glutathione transferase activity Glutathione metabolism electron carrier activity membrane part | details |
| TissueCFM000590 | nucleotide-excision repair factor 1 complex nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion Mineral absorption Nucleotide excision repair single-stranded DNA endodeoxyribonuclease activity copper ion transmembrane transporter activity resolution of meiotic recombination intermediates copper ion transmembrane transport Transcription_related, Transcription factor: G2-like double-strand break repair via homologous recombination membrane part single-stranded DNA binding damaged DNA binding isomerase activity response to oxidative stress | details |
| TissueCFM000716 | glutathione dehydrogenase (ascorbate) activity glucose-6-phosphate isomerase activity Rap1 signaling pathway Calcium signaling pathway ascorbate glutathione cycle GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) cytoskeleton Ascorbate and aldarate metabolism gluconeogenesis I glycolysis I (from glucose 6-phosphate) actin binding glutathione transferase activity gluconeogenesis | details |
| TissueCFM000855 | Mineral absorption red, far-red light phototransduction response to far red light positive regulation of circadian rhythm Circadian rhythm ribonuclease T2 activity RNA phosphodiester bond hydrolysis, endonucleolytic Transcription_related, Transcription factor: FAR1 Transcription_related, Transcription factor: GRAS positive regulation of transcription, DNA-templated | details |
| TissueCFM001091 | Transcription_related, Transcription factor: SRS nucleoside triphosphate catabolic process chalcone isomerase activity Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) protein tyrosine phosphatase activity cytochrome-c oxidase activity peptidyl-tyrosine dephosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |