TissueCFM000590's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleotide-excision repair factor 1 complex | 0.001063908 | GO:0000110 |
| nucleotide-excision repair involved in interstrand cross-link repair | 0.002606576 | GO:1901255 |
| nucleotide-excision repair, DNA incision, 5'-to lesion | 0.002606576 | GO:0006296 |
| Mineral absorption | 0.002658199 | KEGG pathway |
| Nucleotide excision repair | 0.002658199 | KEGG pathway |
| single-stranded DNA endodeoxyribonuclease activity | 0.004048164 | GO:0000014 |
| copper ion transmembrane transporter activity | 0.004048164 | GO:0005375 |
| resolution of meiotic recombination intermediates | 0.004559822 | GO:0000712 |
| copper ion transmembrane transport | 0.004559822 | GO:0035434 |
| Transcription_related, Transcription factor: G2-like | 0.004778752 | TF family |
| double-strand break repair via homologous recombination | 0.006251161 | GO:0000724 |
| membrane part | 0.009021865 | GO:0044425 |
| single-stranded DNA binding | 0.012126559 | GO:0003697 |
| damaged DNA binding | 0.012126559 | GO:0003684 |
| isomerase activity | 0.014538975 | GO:0016853 |
| response to oxidative stress | 0.040559744 | GO:0006979 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003497 | - | - |
| CRO_T010570 | AT5G41150 (0) | UVH1|ULTRAVIOLET HYPERSENSITIVE 1 |
| CRO_T025763 | AT1G32240 (6.00E-20) | KAN2|KANADI 2 |
| CRO_T025902 | AT3G43110 (2.00E-17) | unknown protein |
| CRO_T029677 | AT3G02410 (7.00E-17) | ICME-LIKE2|Isoprenylcysteine methylesterase-like 2 |
| CRO_T031404 | AT5G59030 (3.00E-29) | COPT1|copper transporter 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000066 | post-embryonic root development protein domain specific binding MAPK signaling pathway - yeast Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: HB | details |
| TissueCFM000160 | esterified suberin biosynthesis phaseic acid biosynthesis Cytochrome_P450, Cytochrome P450: CYP87A | details |
| TissueCFM000252 | cytochrome-c oxidase activity hydrogen ion transmembrane transport mitochondrion aerobic respiration I (cytochrome c) cytoplasmic, membrane-bounded vesicle membrane part Oxidative phosphorylation | details |
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
| TissueCFM000445 | Mannose type O-glycan biosyntheis post-embryonic root development hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MAPK signaling pathway - yeast | details |
| TissueCFM000470 | nonphotochemical quenching mitochondrial electron transport, ubiquinol to cytochrome c toxin catabolic process glutathione metabolic process mitochondrial respiratory chain complex III glutathione transferase activity Glutathione metabolism electron carrier activity membrane part | details |
| TissueCFM000855 | Mineral absorption red, far-red light phototransduction response to far red light positive regulation of circadian rhythm Circadian rhythm ribonuclease T2 activity RNA phosphodiester bond hydrolysis, endonucleolytic Transcription_related, Transcription factor: FAR1 Transcription_related, Transcription factor: GRAS positive regulation of transcription, DNA-templated | details |
| TissueCFM001091 | Transcription_related, Transcription factor: SRS nucleoside triphosphate catabolic process chalcone isomerase activity Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) protein tyrosine phosphatase activity cytochrome-c oxidase activity peptidyl-tyrosine dephosphorylation | details |
| TissueCFM001740 | putrescine biosynthetic process cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) phosphopyruvate hydratase activity protein-arginine deiminase activity agmatine deiminase activity polynucleotide 5'-hydroxyl-kinase activity phosphopyruvate hydratase complex Ubiquitin_Proteasome_system, E3 adaptor: BTB putrescine biosynthesis II Arginine and proline metabolism gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process | details |
Expression profiles
 Show details about module gene expression profiling |