TissueCFM000855's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Mineral absorption | 0.002067152 | KEGG pathway |
| red, far-red light phototransduction | 0.010316759 | GO:0009585 |
| response to far red light | 0.010316759 | GO:0010218 |
| positive regulation of circadian rhythm | 0.010316759 | GO:0042753 |
| Circadian rhythm | 0.010316759 | KEGG pathway |
| ribonuclease T2 activity | 0.01823875 | GO:0033897 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.023218398 | GO:0090502 |
| Transcription_related, Transcription factor: FAR1 | 0.026181577 | TF family |
| Transcription_related, Transcription factor: GRAS | 0.026181577 | TF family |
| positive regulation of transcription, DNA-templated | 0.026188773 | GO:0045893 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004829 | AT1G14220 (4.00E-64) | Ribonuclease T2 family protein |
| CRO_T006479 | AT1G28220 (6.00E-43) | ATPUP3|purine permease 3 |
| CRO_T014185 | AT1G50600 (9.00E-43) | SCL5|scarecrow-like 5 |
| CRO_T024294 | AT2G43280 (4.00E-14) | Far-red impaired responsive (FAR1) family protein |
| CRO_T028459 | - | - |
| CRO_T029677 | AT3G02410 (7.00E-17) | ICME-LIKE2|Isoprenylcysteine methylesterase-like 2 |
| CRO_T031403 | AT5G59030 (1.00E-19) | COPT1|copper transporter 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000001 | Transcription_related, Transcription factor: FAR1 | details |
| TissueCFM000066 | post-embryonic root development protein domain specific binding MAPK signaling pathway - yeast Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: HB | details |
| TissueCFM000160 | esterified suberin biosynthesis phaseic acid biosynthesis Cytochrome_P450, Cytochrome P450: CYP87A | details |
| TissueCFM000194 | Transcription_related, Transcription factor: FAR1 aspartic endopeptidase activity, intramembrane cleaving manganese:proton antiporter activity integral component of lumenal side of endoplasmic reticulum membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane Golgi-associated vesicle membrane late endosome regulation of sequestering of zinc ion response to copper ion response to zinc ion response to far red light manganese ion transmembrane transport membrane protein proteolysis response to manganese ion cellular manganese ion homeostasis positive regulation of circadian rhythm Circadian rhythm Terpenoid backbone biosynthesis red, far-red light phototransduction signal peptide processing pollen germination | details |
| TissueCFM000252 | cytochrome-c oxidase activity hydrogen ion transmembrane transport mitochondrion aerobic respiration I (cytochrome c) cytoplasmic, membrane-bounded vesicle membrane part Oxidative phosphorylation | details |
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
| TissueCFM000445 | Mannose type O-glycan biosyntheis post-embryonic root development hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MAPK signaling pathway - yeast | details |
| TissueCFM000470 | nonphotochemical quenching mitochondrial electron transport, ubiquinol to cytochrome c toxin catabolic process glutathione metabolic process mitochondrial respiratory chain complex III glutathione transferase activity Glutathione metabolism electron carrier activity membrane part | details |
| TissueCFM000511 | secologanin and strictosidine biosynthesis aspartic-type endopeptidase activity geraniol and geranial biosynthesis signal recognition particle, endoplasmic reticulum targeting sinapyl alcohol dehydrogenase activity signal recognition particle binding 7S RNA binding cinnamyl-alcohol dehydrogenase activity ADP binding | details |
| TissueCFM000590 | nucleotide-excision repair factor 1 complex nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion Mineral absorption Nucleotide excision repair single-stranded DNA endodeoxyribonuclease activity copper ion transmembrane transporter activity resolution of meiotic recombination intermediates copper ion transmembrane transport Transcription_related, Transcription factor: G2-like double-strand break repair via homologous recombination membrane part single-stranded DNA binding damaged DNA binding isomerase activity response to oxidative stress | details |
| TissueCFM000759 | Proteasome cytosolic proteasome complex nuclear proteasome complex positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex TBP-class protein binding proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process phosphate acquisition positive regulation of circadian rhythm response to far red light Circadian rhythm red, far-red light phototransduction spliceosomal complex assembly U2-type prespliceosome U12-type spliceosomal complex U2 snRNP proteasome complex triglyceride lipase activity protein deubiquitination thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM001091 | Transcription_related, Transcription factor: SRS nucleoside triphosphate catabolic process chalcone isomerase activity Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) protein tyrosine phosphatase activity cytochrome-c oxidase activity peptidyl-tyrosine dephosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |