TissueCFM000297's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA aminoacylation for protein translation | 0.007174487 | GO:0006418 |
| aminoacyl-tRNA ligase activity | 0.022140862 | GO:0004812 |
| Transcription_related, Transcription regulator: mTERF | 0.02385568 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007446 | AT3G05545 (6.00E-20) | RING/U-box superfamily protein |
| CRO_T009523 | AT2G34040 (5.00E-154) | Apoptosis inhibitory protein 5 (API5) |
| CRO_T018373 | AT3G02760 (4.00E-167) | Class II aaRS and biotin synthetases superfamily protein |
| CRO_T018520 | AT2G37230 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T019501 | AT1G29850 (3.00E-16) | double-stranded DNA-binding family protein |
| CRO_T019825 | AT3G02710 (0) | ARM repeat superfamily protein |
| CRO_T020862 | AT5G44060 (8.00E-21) | unknown protein |
| CRO_T028789 | AT5G54180 (2.00E-13) | PTAC15|plastid transcriptionally active 15 |
| CRO_T033493 | AT1G09820 (4.00E-16) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000545 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K L-glutamine degradation I L-histidine biosynthesis MAP kinase kinase activity C-19 gibberellin 2-beta-dioxygenase activity transferase activity, transferring pentosyl groups triglyceride lipase activity gibberellin catabolic process receptor signaling protein serine/threonine kinase activity triacylglycerol degradation | details |
| TissueCFM000636 | eugenol and isoeugenol biosynthesis L-glutamine degradation I L-histidine biosynthesis pseudouridine degradation Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Transcription_related, Transcription factor: BES1 DNA N-glycosylase activity beta-N-acetylhexosaminidase activity transferase activity, transferring pentosyl groups Transcription_related, Transcription factor: C2C2-GATA Ubiquitin_Proteasome_system, E1: ThiF THO complex DNA-directed RNA polymerase V complex Golgi apparatus Cul4-RING E3 ubiquitin ligase complex production of ta-siRNAs involved in RNA interference regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation | details |
| TissueCFM000787 | photorespiration tRNA aminoacylation for protein translation outer membrane formation of translation preinitiation complex aminoacyl-tRNA ligase activity phosphatase activity dephosphorylation GTPase activity translation initiation factor activity | details |
| TissueCFM001297 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 response to endoplasmic reticulum stress | details |
| TissueCFM001345 | Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase inositol hexakisphosphate binding Plant hormone signal transduction auxin-activated signaling pathway zinc II ion transmembrane transport zinc ion transmembrane transporter activity organic cyclic compound binding heterocyclic compound binding 2-alkenal reductase [NAD(P)] activity | details |
Expression profiles
 Show details about module gene expression profiling |