TissueCFM000545's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.1.3: MAP2K | 0.013536126 | kinase family |
| L-glutamine degradation I | 0.015160634 | plantCyc |
| L-histidine biosynthesis | 0.015160634 | plantCyc |
| MAP kinase kinase activity | 0.02238428 | GO:0004708 |
| C-19 gibberellin 2-beta-dioxygenase activity | 0.02238428 | GO:0052634 |
| transferase activity, transferring pentosyl groups | 0.02238428 | GO:0016763 |
| triglyceride lipase activity | 0.02349655 | GO:0004806 |
| gibberellin catabolic process | 0.035317687 | GO:0045487 |
| receptor signaling protein serine/threonine kinase activity | 0.037555623 | GO:0004702 |
| triacylglycerol degradation | 0.043043825 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005887 | AT2G02800 (4.00E-169) | APK2B|protein kinase 2B; Kin2|kinase 2 |
| CRO_T007446 | AT3G05545 (6.00E-20) | RING/U-box superfamily protein |
| CRO_T012004 | AT4G26900 (4.00E-88) | AT-HF|HIS HF |
| CRO_T016054 | AT5G07200 (4.00E-36) | ATGA20OX3|GIBBERELLIN 20-OXIDASE 3 |
| CRO_T020175 | AT3G21220 (4.00E-127) | ATMEK5|MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5; MEK5|MAP KINASE KINASE 5 |
| CRO_T020711 | AT3G12570 (0) | FYD|FYD |
| CRO_T020862 | AT5G44060 (8.00E-21) | unknown protein |
| CRO_T024006 | AT5G12260 (2.00E-163) | |
| CRO_T027299 | AT1G56310 (2.00E-16) | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| CRO_T027794 | AT3G57140 (0) | SDP1-LIKE|sugar-dependent 1-like |
| CRO_T033493 | AT1G09820 (4.00E-16) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000191 | DNA binding transcription factor activity, sequence-specific DNA binding hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: ARR-B Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB Transcription_related, Transcription factor: Tify | details |
| TissueCFM000297 | tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity Transcription_related, Transcription regulator: mTERF | details |
| TissueCFM000518 | Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV ion channel activity formation of glycosidic bonds, GlycosylTransferases: GTnc Cysteine and methionine metabolism Plant-pathogen interaction metal ion transport cellular transition metal ion homeostasis ion transmembrane transport transition metal ion binding protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TissueCFM000636 | eugenol and isoeugenol biosynthesis L-glutamine degradation I L-histidine biosynthesis pseudouridine degradation Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Transcription_related, Transcription factor: BES1 DNA N-glycosylase activity beta-N-acetylhexosaminidase activity transferase activity, transferring pentosyl groups Transcription_related, Transcription factor: C2C2-GATA Ubiquitin_Proteasome_system, E1: ThiF THO complex DNA-directed RNA polymerase V complex Golgi apparatus Cul4-RING E3 ubiquitin ligase complex production of ta-siRNAs involved in RNA interference regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation | details |
| TissueCFM000681 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K 1-phosphatidylinositol 4-kinase activity MAP kinase kinase activity 3-phosphoinositide biosynthesis chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II D-myo-inositol (1,4,5)-trisphosphate biosynthesis MAPK signaling pathway - plant receptor signaling protein serine/threonine kinase activity Phenylpropanoid biosynthesis | details |
| TissueCFM001227 | Transcription_related, Transcription factor: BES1 protein dimerization activity N-acetyl-gamma-glutamyl-phosphate reductase activity transferase activity, transferring pentosyl groups L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-histidine biosynthesis L-ornithine biosynthesis I aminopeptidase activity cellular amino acid biosynthetic process arginine biosynthetic process brassinosteroid mediated signaling pathway 2-Oxocarboxylic acid metabolism Arginine and proline metabolism NAD binding Biosynthesis of amino acids chloroplast | details |
Expression profiles
 Show details about module gene expression profiling |