TissueCFM000787's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| photorespiration | 0.003718455 | plantCyc |
| tRNA aminoacylation for protein translation | 0.008772705 | GO:0006418 |
| outer membrane | 0.008863283 | GO:0019867 |
| formation of translation preinitiation complex | 0.014598507 | GO:0001731 |
| aminoacyl-tRNA ligase activity | 0.020231849 | GO:0004812 |
| phosphatase activity | 0.023244289 | GO:0016791 |
| dephosphorylation | 0.026820918 | GO:0016311 |
| GTPase activity | 0.049745684 | GO:0003924 |
| translation initiation factor activity | 0.049745684 | GO:0003743 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004563 | AT2G47620 (8.00E-83) | ATSWI3A|SWITCH/sucrose nonfermenting 3A |
| CRO_T007514 | AT5G05520 (2.00E-177) | Outer membrane OMP85 family protein |
| CRO_T007821 | AT4G34910 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T017303 | AT5G47760 (4.00E-97) | ATPGLP2|2-phosphoglycolate phosphatase 2 |
| CRO_T018373 | AT3G02760 (4.00E-167) | Class II aaRS and biotin synthetases superfamily protein |
| CRO_T021834 | AT1G04170 (0) | EIF2 GAMMA|eukaryotic translation initiation factor 2 gamma subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000297 | tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity Transcription_related, Transcription regulator: mTERF | details |
| TissueCFM001068 | RNA transport photorespiration tRNA (guanine) methyltransferase activity chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore distribution nuclear pore outer ring condensed chromosome kinetochore RNA export from nucleus RNA polymerase I activity nucleocytoplasmic transporter activity structural constituent of nuclear pore DNA-directed RNA polymerase I complex phosphatase activity tRNA methylation protein import into nucleus dephosphorylation | details |
| TissueCFM001409 | nucleolus photorespiration positive regulation of transport protein binding involved in protein folding megagametogenesis cytosol phosphatase activity ribosomal large subunit assembly rRNA processing Ubiquitin_Proteasome_system, E3 adaptor: DWD unfolded protein binding dephosphorylation Ribosome biogenesis in eukaryotes protein folding | details |
| TissueCFM001741 | DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling response to high light intensity 3'-5'-exodeoxyribonuclease activity delta DNA polymerase complex oligosaccharyltransferase complex protein N-linked glycosylation response to hydrogen peroxide 5S rRNA binding response to heat DNA biosynthetic process DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |