TissueCFM000321's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydroxyjasmonate sulfate biosynthesis | 0.001595391 | plantCyc |
| indole-3-acetate activation I | 0.001595391 | plantCyc |
| Transcription_related, Transcription factor: HSF | 0.003718455 | TF family |
| regulation of photomorphogenesis | 0.00726834 | GO:0010099 |
| response to red light | 0.00726834 | GO:0010114 |
| peroxisome organization | 0.00726834 | GO:0007031 |
| regulation of circadian rhythm | 0.00726834 | GO:0042752 |
| response to blue light | 0.00726834 | GO:0009637 |
| autophagosome assembly | 0.007786356 | GO:0000045 |
| pollen germination | 0.009728631 | GO:0009846 |
| ethylene-activated signaling pathway | 0.009728631 | GO:0009873 |
| protein targeting to vacuole | 0.010374907 | GO:0006623 |
| peroxisomal membrane | 0.012867585 | GO:0005778 |
| pre-autophagosomal structure | 0.012867585 | GO:0000407 |
| Apelin signaling pathway | 0.016540086 | KEGG pathway |
| Peroxisome | 0.016540086 | KEGG pathway |
| nucleoplasm | 0.027842713 | GO:0005654 |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003787 | AT3G61710 (1.00E-62) | ATG6|AUTOPHAGY 6; BECLIN1|BECLIN1 |
| CRO_T004580 | AT2G21150 (1.00E-85) | XCT|XAP5 CIRCADIAN TIMEKEEPER |
| CRO_T006724 | AT2G45690 (4.00E-110) | ATPEX16|ARABIDOPSIS PEROXIN 16; PEX16|PEROXIN 16; SSE1|SHRUNKEN SEED 1 |
| CRO_T008436 | AT1G51760 (7.00E-132) | IAR3|IAA-ALANINE RESISTANT 3; JR3|JASMONIC ACID RESPONSIVE 3 |
| CRO_T020117 | AT4G18880 (2.00E-77) | AT-HSFA4A|HEAT SHOCK TRANSCRIPTION FACTOR A4A |
| CRO_T021426 | AT1G11400 (2.00E-27) | PYM|partner of Y14-MAGO |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000494 | homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 pectin biosynthetic process phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation 1-phosphatidylinositol 4-kinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism Inositol phosphate metabolism | details |
| TissueCFM000846 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc pyridoxamine-phosphate oxidase activity pyridoxal phosphate biosynthetic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex nucleoplasm calcium-dependent phospholipid binding RNA transport FMN binding response to stimulus | details |
| TissueCFM001082 | Transcription_related, Transcription factor: Alfin-like peroxisome organization pollen germination autophagosome assembly protein targeting to vacuole peroxisomal membrane pre-autophagosomal structure clathrin adaptor complex mitochondrial large ribosomal subunit large ribosomal subunit rRNA binding transmembrane receptor protein kinase activity nucleoplasm | details |
Expression profiles
 Show details about module gene expression profiling |