TissueCFM000494's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan biosynthesis | 0.004542899 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.011136923 | cazy family |
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.011136923 | cazy family |
| pectin biosynthetic process | 0.011194097 | GO:0045489 |
| phosphatidylinositol-mediated signaling | 0.011194097 | GO:0048015 |
| phosphatidylinositol phosphorylation | 0.013763921 | GO:0046854 |
| 1-phosphatidylinositol 4-kinase activity | 0.014165016 | GO:0004430 |
| polygalacturonate 4-alpha-galacturonosyltransferase activity | 0.016514134 | GO:0047262 |
| nucleotidyltransferase activity | 0.026689806 | GO:0016779 |
| Amino sugar and nucleotide sugar metabolism | 0.045756969 | KEGG pathway |
| Inositol phosphate metabolism | 0.045756969 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005015 | AT5G44280 (9.00E-50) | ATRING1A|RING 1A |
| CRO_T012428 | AT5G44440 (1.00E-120) | FAD-binding Berberine family protein |
| CRO_T012433 | AT2G20810 (0) | GAUT10|galacturonosyltransferase 10 |
| CRO_T015402 | AT1G21870 (5.00E-28) | GONST5|golgi nucleotide sugar transporter 5 |
| CRO_T021426 | AT1G11400 (2.00E-27) | PYM|partner of Y14-MAGO |
| CRO_T021784 | AT3G05540 (1.00E-64) | Methionine sulfoxide reductase (MSS4-like) family protein |
| CRO_T023752 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000321 | hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I Transcription_related, Transcription factor: HSF regulation of photomorphogenesis response to red light peroxisome organization regulation of circadian rhythm response to blue light autophagosome assembly pollen germination ethylene-activated signaling pathway protein targeting to vacuole peroxisomal membrane pre-autophagosomal structure Apelin signaling pathway Peroxisome nucleoplasm RNA transport | details |
| TissueCFM000691 | xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation nucleosome assembly Inositol phosphate metabolism 1-phosphatidylinositol 4-kinase activity cytoskeletal part microtubule cytoskeleton nucleosome microtubule motor activity | details |
| TissueCFM000846 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc pyridoxamine-phosphate oxidase activity pyridoxal phosphate biosynthetic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex nucleoplasm calcium-dependent phospholipid binding RNA transport FMN binding response to stimulus | details |
| TissueCFM001082 | Transcription_related, Transcription factor: Alfin-like peroxisome organization pollen germination autophagosome assembly protein targeting to vacuole peroxisomal membrane pre-autophagosomal structure clathrin adaptor complex mitochondrial large ribosomal subunit large ribosomal subunit rRNA binding transmembrane receptor protein kinase activity nucleoplasm | details |
| TissueCFM001725 | Choline metabolism in cancer mannitol degradation II mannokinase activity glucose binding glucokinase activity fructokinase activity glucose 6-phosphate metabolic process cellular glucose homeostasis MAP kinase kinase kinase activity carbohydrate phosphorylation activation of MAPKK activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK cascade glycolytic process multicellular organism development | details |
Expression profiles
 Show details about module gene expression profiling |