TissueCFM000331's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| MAPK signaling pathway - fly | 0.003722304 | KEGG pathway |
| cell surface | 0.006435695 | GO:0009986 |
| cytoplasmic side of plasma membrane | 0.006435695 | GO:0009898 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 0.007872655 | plantCyc |
| reactive oxygen species degradation | 0.007872655 | plantCyc |
| superoxide radicals degradation | 0.007872655 | plantCyc |
| Glycolysis / Gluconeogenesis | 0.008227641 | KEGG pathway |
| chloroplast avoidance movement | 0.008794165 | GO:0009903 |
| blue light signaling pathway | 0.008794165 | GO:0009785 |
| negative regulation of anion channel activity by blue light | 0.008794165 | GO:0010362 |
| phototropism | 0.008794165 | GO:0009638 |
| regulation of proton transport | 0.008794165 | GO:0010155 |
| chloroplast accumulation movement | 0.009420231 | GO:0009904 |
| regulation of stomatal movement | 0.009420231 | GO:0010119 |
| photosynthesis light reactions | 0.010691616 | plantCyc |
| removal of superoxide radicals | 0.013731748 | GO:0019430 |
| photosystem II oxygen evolving complex | 0.019278573 | GO:0009654 |
| extrinsic component of membrane | 0.019278573 | GO:0019898 |
| blue light photoreceptor activity | 0.020771289 | GO:0009882 |
| signal transduction by protein phosphorylation | 0.021951325 | GO:0023014 |
| mitochondrial matrix | 0.025034386 | GO:0005759 |
| phosphorelay signal transduction system | 0.02632408 | GO:0000160 |
| phosphorelay sensor kinase activity | 0.028522562 | GO:0000155 |
| aldehyde dehydrogenase (NAD) activity | 0.028522562 | GO:0004029 |
| superoxide dismutase activity | 0.028522562 | GO:0004784 |
| protein autophosphorylation | 0.032541458 | GO:0046777 |
| FMN binding | 0.033165378 | GO:0010181 |
| identical protein binding | 0.037108145 | GO:0042802 |
| Photosynthesis | 0.04557005 | KEGG pathway |
| vacuole | 0.0490206 | GO:0005773 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010415 | AT3G45780 (0) | NPH1|NONPHOTOTROPIC HYPOCOTYL 1; PHOT1|phototropin 1; RPT1|ROOT PHOTOTROPISM 1 |
| CRO_T013634 | - | - |
| CRO_T018722 | AT3G10920 (3.00E-105) | ATMSD1|ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1; MEE33|MATERNAL EFFECT EMBRYO ARREST 33; MSD1|manganese superoxide dismutase 1 |
| CRO_T021467 | AT4G33500 (2.00E-69) | Protein phosphatase 2C family protein |
| CRO_T023643 | AT1G77090 (8.00E-08) | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein |
| CRO_T031672 | AT1G79440 (5.00E-90) | ALDH5F1|aldehyde dehydrogenase 5F1; ENF1|ENLARGED FIL EXPRESSION DOMAIN 1; SSADH|SUCCINIC SEMIALDEHYDE DEHYDROGENASE; SSADH1|SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000061 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis heat shock protein binding cinnamyl-alcohol dehydrogenase activity aldehyde dehydrogenase (NAD) activity sinapyl alcohol dehydrogenase activity lignin biosynthetic process Glycolysis / Gluconeogenesis Phenylpropanoid biosynthesis oxidation-reduction process unfolded protein binding | details |
| TissueCFM000370 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family chloroplast photosystem II chloroplast thylakoid membrane photosystem I reaction center chloroplast thylakoid lumen response to wounding response to ozone photosynthesis, light harvesting mitochondrial translational elongation response to UV-B Glycolysis / Gluconeogenesis Photosynthesis - antenna proteins MAPK cascade protein-chromophore linkage photosystem I | details |
| TissueCFM001138 | MAPK signaling pathway - fly α-amyrin biosynthesis Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Sesquiterpenoid and triterpenoid biosynthesis mangrove triterpenoid biosynthesis oleanolate biosynthesis reactive oxygen species degradation superoxide radicals degradation mitochondrial matrix superoxide dismutase activity intramolecular transferase activity removal of superoxide radicals metal ion binding phosphoprotein phosphatase activity | details |
| TissueCFM001215 | Aminoacyl-tRNA biosynthesis threonyl-tRNA aminoacylation valyl-tRNA aminoacylation Photosynthesis - antenna proteins valine-tRNA ligase activity threonine-tRNA ligase activity benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis regulation of translational fidelity photosynthesis, light harvesting in photosystem I photosynthesis light reactions aminoacyl-tRNA editing activity cinnamyl-alcohol dehydrogenase activity pigment binding sinapyl alcohol dehydrogenase activity Glycolysis / Gluconeogenesis aldehyde dehydrogenase (NAD) activity response to light stimulus lignin biosynthetic process protein-chromophore linkage Phenylpropanoid biosynthesis chlorophyll binding embryo development ending in seed dormancy | details |
| TissueCFM001382 | protochlorophyllide reductase activity organic acid transmembrane transporter activity pyruvate transmembrane transporter activity NADPH dehydrogenase activity GTP cyclohydrolase II activity thiamine-phosphate diphosphorylase activity blue light photoreceptor activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity cytoplasmic side of plasma membrane chloroplast envelope cell surface flavin biosynthesis I (bacteria and plants) geraniol and geranial biosynthesis thiamine diphosphate biosynthesis IV (eukaryotes) thiamine biosynthetic process blue light signaling pathway regulation of proton transport chloroplast avoidance movement negative regulation of anion channel activity by blue light plasma membrane pyruvate transport phototropism chloroplast accumulation movement regulation of stomatal movement riboflavin biosynthetic process thylakoid membrane organization chloroplast membrane cinnamyl-alcohol dehydrogenase activity sinapyl alcohol dehydrogenase activity Riboflavin metabolism Porphyrin and chlorophyll metabolism phosphorelay sensor kinase activity Phenylpropanoid biosynthesis signal transduction by protein phosphorylation vegetative to reproductive phase transition of meristem lignin biosynthetic process phosphorelay signal transduction system protein peptidyl-prolyl isomerization FMN binding identical protein binding peptidyl-prolyl cis-trans isomerase activity protein autophosphorylation | details |
| TissueCFM001404 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Glycolysis / Gluconeogenesis oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor aldehyde dehydrogenase (NAD) activity sulfate assimilation carbohydrate transmembrane transport cellular response to oxidative stress glycerol ether metabolic process chloroplast thylakoid lumen response to stimulus regulation of catalytic activity | details |
Expression profiles
 Show details about module gene expression profiling |