TissueCFM000370's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 0.003246367 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.008854906 | kinase family |
| Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family | 0.009724869 | kinase family |
| chloroplast photosystem II | 0.013513183 | GO:0030095 |
| chloroplast thylakoid membrane | 0.013513183 | GO:0009535 |
| photosystem I reaction center | 0.015038145 | GO:0009538 |
| chloroplast thylakoid lumen | 0.016911166 | GO:0009543 |
| response to wounding | 0.02253024 | GO:0009611 |
| response to ozone | 0.02253024 | GO:0010193 |
| photosynthesis, light harvesting | 0.02253024 | GO:0009765 |
| mitochondrial translational elongation | 0.02253024 | GO:0070125 |
| response to UV-B | 0.02253024 | GO:0010224 |
| Glycolysis / Gluconeogenesis | 0.038019008 | KEGG pathway |
| Photosynthesis - antenna proteins | 0.038019008 | KEGG pathway |
| MAPK cascade | 0.03958023 | GO:0000165 |
| protein-chromophore linkage | 0.03958023 | GO:0018298 |
| photosystem I | 0.049448078 | GO:0009522 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000100 | AT2G34460 (3.00E-102) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T001171 | AT1G29910 (2.00E-135) | CAB3|chlorophyll A/B binding protein 3; LHCB1.2|LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2 |
| CRO_T004429 | AT2G20260 (2.00E-29) | PSAE-2|photosystem I subunit E-2 |
| CRO_T006874 | AT1G14345 (4.00E-56) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T019910 | AT1G51400 (3.00E-24) | Photosystem II 5 kD protein |
| CRO_T022398 | AT2G18170 (3.00E-174) | ATMPK7|MAP kinase 7 |
| CRO_T025797 | AT4G20360 (0) | ATRABE1B|RAB GTPase homolog E1B |
| CRO_T026949 | AT3G16250 (7.00E-19) | NDF4|NDH-dependent cyclic electron flow 1; PnsB3|Photosynthetic NDH subcomplex B 3 |
| CRO_T026954 | - | - |
| CRO_T031672 | AT1G79440 (5.00E-90) | ALDH5F1|aldehyde dehydrogenase 5F1; ENF1|ENLARGED FIL EXPRESSION DOMAIN 1; SSADH|SUCCINIC SEMIALDEHYDE DEHYDROGENASE; SSADH1|SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000061 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis heat shock protein binding cinnamyl-alcohol dehydrogenase activity aldehyde dehydrogenase (NAD) activity sinapyl alcohol dehydrogenase activity lignin biosynthetic process Glycolysis / Gluconeogenesis Phenylpropanoid biosynthesis oxidation-reduction process unfolded protein binding | details |
| TissueCFM000331 | MAPK signaling pathway - fly cell surface cytoplasmic side of plasma membrane benzoate biosynthesis III (CoA-dependent, non-β-oxidative) reactive oxygen species degradation superoxide radicals degradation Glycolysis / Gluconeogenesis chloroplast avoidance movement blue light signaling pathway negative regulation of anion channel activity by blue light phototropism regulation of proton transport chloroplast accumulation movement regulation of stomatal movement photosynthesis light reactions removal of superoxide radicals photosystem II oxygen evolving complex extrinsic component of membrane blue light photoreceptor activity signal transduction by protein phosphorylation mitochondrial matrix phosphorelay signal transduction system phosphorelay sensor kinase activity aldehyde dehydrogenase (NAD) activity superoxide dismutase activity protein autophosphorylation FMN binding identical protein binding Photosynthesis vacuole | details |
| TissueCFM001215 | Aminoacyl-tRNA biosynthesis threonyl-tRNA aminoacylation valyl-tRNA aminoacylation Photosynthesis - antenna proteins valine-tRNA ligase activity threonine-tRNA ligase activity benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis regulation of translational fidelity photosynthesis, light harvesting in photosystem I photosynthesis light reactions aminoacyl-tRNA editing activity cinnamyl-alcohol dehydrogenase activity pigment binding sinapyl alcohol dehydrogenase activity Glycolysis / Gluconeogenesis aldehyde dehydrogenase (NAD) activity response to light stimulus lignin biosynthetic process protein-chromophore linkage Phenylpropanoid biosynthesis chlorophyll binding embryo development ending in seed dormancy | details |
| TissueCFM001247 | L-valine biosynthesis chloroplast thylakoid membrane response to herbicide valine biosynthetic process photosynthesis, light harvesting isoleucine biosynthetic process Photosynthesis - antenna proteins acetolactate synthase activity 2-Oxocarboxylic acid metabolism thiamine pyrophosphate binding protein-chromophore linkage integral component of membrane photosystem I chlorophyll binding | details |
| TissueCFM001404 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Glycolysis / Gluconeogenesis oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor aldehyde dehydrogenase (NAD) activity sulfate assimilation carbohydrate transmembrane transport cellular response to oxidative stress glycerol ether metabolic process chloroplast thylakoid lumen response to stimulus regulation of catalytic activity | details |
Expression profiles
 Show details about module gene expression profiling |