TissueCFM000435's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA recombination | 0.006638137 | GO:0006310 |
| DNA integration | 0.006638137 | GO:0015074 |
| Transcription_related, Transcription factor: NF-YC | 0.007440758 | TF family |
| aerobic respiration I (cytochrome c) | 0.007777821 | plantCyc |
| Transcription_related, Transcription factor: GRAS | 0.022469848 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005379 | AT2G07727 (2.00E-20) | Di-haem cytochrome, transmembrane; Cytochrome b/b6, C-terminal |
| CRO_T009496 | AT3G48590 (2.00E-63) | NF-YC1|nuclear factor Y, subunit C1 |
| CRO_T010480 | AT1G14920 (1.00E-14) | GAI|GIBBERELLIC ACID INSENSITIVE; RGA2|RESTORATION ON GROWTH ON AMMONIA 2 |
| CRO_T010882 | ATMG00640 (1.00E-26) | ORF25|hydrogen ion transporting ATP synthases, rotational mechanism; zinc ion binding |
| CRO_T027149 | ATCG00560 (5.00E-13) | PSBL|photosystem II reaction center protein L |
| CRO_T032594 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000079 | Transcription_related, Transcription factor: NF-YC plasma membrane vesicle response to sucrose negative regulation of cell aging regulation of nucleic acid-templated transcription negative regulation of flower development protein targeting to vacuole vegetative to reproductive phase transition of meristem transcription cofactor activity transmembrane transporter activity protein heterodimerization activity | details |
| TissueCFM000145 | Transcription_related, Transcription factor: NF-YC Cell cycle - Caulobacter chloroplast stroma | details |
| TissueCFM000186 | Transcription_related, Transcription factor: NF-YC large ribosomal subunit intracellular ribonucleoprotein complex intracellular organelle | details |
| TissueCFM000334 | Transcription_related, Transcription factor: NF-YC ajmaline and sarpagine biosynthesis Starch and sucrose metabolism | details |
| TissueCFM000352 | serine family amino acid biosynthetic process formate catabolic process Hedgehog signaling pathway transferase activity, transferring phosphorus-containing groups phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Orphans Ubiquitin_Proteasome_system, E3 adaptor: BTB signal transduction NAD binding protein heterodimerization activity | details |
| TissueCFM000411 | Transcription_related, Transcription factor: NF-YC Cell cycle - Caulobacter protein heterodimerization activity serine-type endopeptidase activity proteolysis | details |
| TissueCFM000467 | Transcription_related, Transcription factor: NF-YC Phenylpropanoid biosynthesis | details |
| TissueCFM000661 | Plant-pathogen interaction response to symbiont nodulation regulation of nitrogen utilization regulation of phosphorylation regulation of fatty acid biosynthetic process | details |
| TissueCFM000749 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC tRNA binding vesicle fusion exocytosis Ubiquitin_Proteasome_system, E2: UBC SNARE interactions in vesicular transport Transcription_related, Transcription factor: NAC Ubiquitin mediated proteolysis SNAP receptor activity SNARE binding vesicle-mediated transport protein heterodimerization activity SNARE complex | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM000957 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: NF-YC formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY chitinase activity chitin binding cell wall macromolecule catabolic process Amino sugar and nucleotide sugar metabolism Phenylpropanoid biosynthesis chitin catabolic process transition metal ion binding | details |
| TissueCFM000958 | Phenylpropanoid biosynthesis Transcription_related, Transcription factor: NF-YC formation of glycosidic bonds, GlycosylTransferases: GTnc single-organism biosynthetic process organic substance biosynthetic process gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) superpathway of scopolin and esculin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis aromatic compound biosynthetic process D-arabinono-1,4-lactone oxidase activity | details |
| TissueCFM000980 | Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix peptidyl-proline hydroxylation to 4-hydroxy-L-proline Arginine and proline metabolism MAPK signaling pathway SNARE interactions in vesicular transport procollagen-proline 4-dioxygenase activity L-ascorbic acid binding | details |
| TissueCFM001151 | transcription export complex 2 SAGA complex DUBm complex vesicle organization endosome to lysosome transport positive regulation of proteasomal protein catabolic process transcription elongation from RNA polymerase II promoter Golgi to vacuole transport mRNA export from nucleus positive regulation of RNA polymerase II transcriptional preinitiation complex assembly histone deubiquitination positive gravitropism auxin homeostasis nuclear proteasome complex multivesicular body late endosome membrane retromer complex cytosolic proteasome complex Transcription_related, Transcription factor: NF-YC proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process protein targeting to vacuole Endocytosis Ubiquitin_Proteasome_system, E2: UBC extrinsic component of membrane nuclear pore proteasome-activating ATPase activity transcription coactivator activity TBP-class protein binding phosphatidylinositol binding root development positive regulation of transcription, DNA-templated Proteasome Ubiquitin mediated proteolysis protein transport | details |
| TissueCFM001152 | Transcription_related, Transcription factor: NF-YC transferase activity, transferring phosphorus-containing groups Golgi to vacuole transport endosome to lysosome transport auxin homeostasis vesicle organization positive gravitropism Transcription_related, Transcription factor: Orphans retromer complex multivesicular body late endosome membrane Endocytosis protein targeting to vacuole phosphatidylinositol binding extrinsic component of membrane root development protein binding protein heterodimerization activity | details |
| TissueCFM001182 | Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, E2: UBC SNARE interactions in vesicular transport Ubiquitin mediated proteolysis nucleus | details |
| TissueCFM001327 | Cytochrome_P450, Cytochrome P450: CYP734A Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) Transcription_related, Transcription factor: NF-YC protein peptidyl-prolyl isomerization phosphorelay signal transduction system chaperone-mediated protein folding brassinosteroids inactivation secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: Orphans NF-kappa B signaling pathway FK506 binding peptidyl-prolyl cis-trans isomerase activity Plant hormone signal transduction protein heterodimerization activity | details |
| TissueCFM001424 | Ubiquitin mediated proteolysis Transcription_related, Transcription factor: NF-YC Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM001494 | p53 signaling pathway Transcription_related, Transcription factor: NF-YC protein heterodimerization activity | details |
| TissueCFM001579 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: NF-YC L-valine degradation I RIG-I-like receptor signaling pathway phosphoprotein binding malonate-semialdehyde dehydrogenase (acetylating) activity methylmalonate-semialdehyde dehydrogenase (acylating) activity receptor activity abscisic acid binding protein phosphatase inhibitor activity aldehyde dehydrogenase (NAD) activity glutathione metabolic process abscisic acid-activated signaling pathway RNA secondary structure unwinding regulation of protein serine/threonine phosphatase activity negative regulation of catalytic activity Glutathione metabolism | details |
| TissueCFM001767 | Peroxisome regulation of protein kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: NF-YC protein kinase regulator activity protein glycosylation galactosyltransferase activity protein heterodimerization activity polysaccharide binding | details |
| TissueCFM001836 | Cytochrome_P450, Cytochrome P450: CYP89A serine family amino acid biosynthetic process formate catabolic process vernolate biosynthesis I poly-hydroxy fatty acids biosynthesis Transcription_related, Transcription factor: NF-YC Glycosaminoglycan degradation formate dehydrogenase (NAD+) activity phosphoglycerate dehydrogenase activity | details |
Expression profiles
 Show details about module gene expression profiling |