TissueCFM000661's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Plant-pathogen interaction | 0.023544809 | KEGG pathway |
| response to symbiont | 0.049335399 | GO:0009608 |
| nodulation | 0.049335399 | GO:0009877 |
| regulation of nitrogen utilization | 0.049335399 | GO:0006808 |
| regulation of phosphorylation | 0.049335399 | GO:0042325 |
| regulation of fatty acid biosynthetic process | 0.049335399 | GO:0042304 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000501 | AT1G06180 (1.00E-32) | ATMYB13|myb domain protein 13 |
| CRO_T001994 | AT1G52810 (7.00E-25) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T002055 | AT2G22780 (6.00E-29) | PMDH1|peroxisomal NAD-malate dehydrogenase 1 |
| CRO_T002445 | AT5G45340 (2.00E-56) | CYP707A3|cytochrome P450, family 707, subfamily A, polypeptide 3 |
| CRO_T004454 | AT1G70590 (2.00E-57) | F-box family protein |
| CRO_T004768 | AT2G40116 (0) | Phosphoinositide-specific phospholipase C family protein |
| CRO_T006499 | - | - |
| CRO_T009496 | AT3G48590 (2.00E-63) | NF-YC1|nuclear factor Y, subunit C1 |
| CRO_T009829 | - | - |
| CRO_T010229 | AT2G38910 (2.00E-55) | CPK20|calcium-dependent protein kinase 20 |
| CRO_T010942 | AT5G50760 (1.00E-18) | SAUR55|SMALL AUXIN UPREGULATED RNA 55 |
| CRO_T015815 | AT1G58330 (0.00000003) | ZW2|transcription factor-related |
| CRO_T016055 | AT4G01900 (8.00E-41) | GLB1|GLNB1 homolog |
| CRO_T016728 | AT4G37320 (4.00E-115) | CYP81D5|cytochrome P450, family 81, subfamily D, polypeptide 5 |
| CRO_T017276 | AT5G40780 (8.00E-36) | LHT1|lysine histidine transporter 1 |
| CRO_T017918 | AT3G14620 (6.00E-129) | CYP72A8|cytochrome P450, family 72, subfamily A, polypeptide 8 |
| CRO_T018606 | AT4G25310 (5.00E-93) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T020574 | AT5G65830 (2.00E-17) | ATRLP57|receptor like protein 57 |
| CRO_T021479 | AT4G38470 (3.00E-101) | STY46|serine/threonine/tyrosine kinase 46 |
| CRO_T022965 | AT1G22380 (7.00E-167) | AtUGT85A3|UDP-glucosyl transferase 85A3 |
| CRO_T023242 | AT5G27350 (9.00E-40) | SFP1|Major facilitator superfamily protein |
| CRO_T024103 | AT1G21670 (0) | LOCATED IN: cell wall, plant-type cell wall |
| CRO_T024288 | AT5G03530 (9.00E-82) | ATRABC2A|RAB GTPASE HOMOLOG C2A |
| CRO_T028549 | AT1G77210 (2.00E-167) | AtSTP14|sugar transport protein 14 |
| CRO_T030076 | AT5G52450 (1.00E-144) | MATE efflux family protein |
| CRO_T030945 | AT1G17590 (3.00E-38) | NF-YA8|nuclear factor Y, subunit A8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000079 | Transcription_related, Transcription factor: NF-YC plasma membrane vesicle response to sucrose negative regulation of cell aging regulation of nucleic acid-templated transcription negative regulation of flower development protein targeting to vacuole vegetative to reproductive phase transition of meristem transcription cofactor activity transmembrane transporter activity protein heterodimerization activity | details |
| TissueCFM000145 | Transcription_related, Transcription factor: NF-YC Cell cycle - Caulobacter chloroplast stroma | details |
| TissueCFM000186 | Transcription_related, Transcription factor: NF-YC large ribosomal subunit intracellular ribonucleoprotein complex intracellular organelle | details |
| TissueCFM000310 | substrate-specific transmembrane transporter activity hexose transport transmembrane transport vindoline and vinblastine biosynthesis carbohydrate transport Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000334 | Transcription_related, Transcription factor: NF-YC ajmaline and sarpagine biosynthesis Starch and sucrose metabolism | details |
| TissueCFM000352 | serine family amino acid biosynthetic process formate catabolic process Hedgehog signaling pathway transferase activity, transferring phosphorus-containing groups phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Orphans Ubiquitin_Proteasome_system, E3 adaptor: BTB signal transduction NAD binding protein heterodimerization activity | details |
| TissueCFM000411 | Transcription_related, Transcription factor: NF-YC Cell cycle - Caulobacter protein heterodimerization activity serine-type endopeptidase activity proteolysis | details |
| TissueCFM000435 | DNA recombination DNA integration Transcription_related, Transcription factor: NF-YC aerobic respiration I (cytochrome c) Transcription_related, Transcription factor: GRAS | details |
| TissueCFM000467 | Transcription_related, Transcription factor: NF-YC Phenylpropanoid biosynthesis | details |
| TissueCFM000702 | Plant hormone signal transduction inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity inositol-1,4,5-trisphosphate 5-phosphatase activity phosphatidylinositol phosphate 5-phosphatase activity inositol-polyphosphate 5-phosphatase activity ent-kaurenoate oxidase activity regulation of clathrin-mediated endocytosis cellular response to salt stress papaverine biosynthesis Diterpenoid biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation GA12 biosynthesis Cytochrome_P450, Cytochrome P450: CYP88A iron ion binding heme binding Cytochrome_P450, Cytochrome P450: CYP72A redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Transcription_related, Transcription factor: bZIP phosphatidylinositol dephosphorylation gibberellin biosynthetic process secologanin and strictosidine biosynthesis | details |
| TissueCFM000729 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage regulation of phosphorylation regulation of nitrogen utilization uracil salvage regulation of fatty acid biosynthetic process uracil phosphoribosyltransferase activity acetylglutamate kinase regulator activity UMP biosynthetic process anthocyanin-containing compound biosynthetic process pyrimidine nucleoside salvage pyrimidine salvage pathway formation of glycosidic bonds, GlycosylTransferases: GTnc uridine kinase activity Pyrimidine metabolism vindoline and vinblastine biosynthesis cell wall organization or biogenesis regulation of catalytic activity response to cytokinin | details |
| TissueCFM000730 | chloroplast thylakoid regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation chloroplastic endopeptidase Clp complex anthocyanin-containing compound biosynthetic process Arginine and proline metabolism Cell cycle - Caulobacter acetylglutamate kinase regulator activity cellular protein metabolic process regulation of catalytic activity Transcription_related, Transcription factor: Trihelix | details |
| TissueCFM000749 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC tRNA binding vesicle fusion exocytosis Ubiquitin_Proteasome_system, E2: UBC SNARE interactions in vesicular transport Transcription_related, Transcription factor: NAC Ubiquitin mediated proteolysis SNAP receptor activity SNARE binding vesicle-mediated transport protein heterodimerization activity SNARE complex | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM000957 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: NF-YC formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY chitinase activity chitin binding cell wall macromolecule catabolic process Amino sugar and nucleotide sugar metabolism Phenylpropanoid biosynthesis chitin catabolic process transition metal ion binding | details |
| TissueCFM000958 | Phenylpropanoid biosynthesis Transcription_related, Transcription factor: NF-YC formation of glycosidic bonds, GlycosylTransferases: GTnc single-organism biosynthetic process organic substance biosynthetic process gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) superpathway of scopolin and esculin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis aromatic compound biosynthetic process D-arabinono-1,4-lactone oxidase activity | details |
| TissueCFM000980 | Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix peptidyl-proline hydroxylation to 4-hydroxy-L-proline Arginine and proline metabolism MAPK signaling pathway SNARE interactions in vesicular transport procollagen-proline 4-dioxygenase activity L-ascorbic acid binding | details |
| TissueCFM001011 | Transcription_related, Transcription factor: NF-YA response to symbiont nodulation geraniol and geranial biosynthesis mannitol degradation II Phenylpropanoid biosynthesis Antigen processing and presentation protein autophosphorylation peptidyl-serine phosphorylation Plant-pathogen interaction calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor intracellular signal transduction | details |
| TissueCFM001119 | Transcription_related, Transcription factor: NF-YA regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation Antigen processing and presentation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process benzoate biosynthesis I (CoA-dependent, β-oxidative) glucose import regulation of catalytic activity glucose transmembrane transport proton transport transferase activity, transferring acyl groups sugar:proton symporter activity glucose transmembrane transporter activity | details |
| TissueCFM001151 | transcription export complex 2 SAGA complex DUBm complex vesicle organization endosome to lysosome transport positive regulation of proteasomal protein catabolic process transcription elongation from RNA polymerase II promoter Golgi to vacuole transport mRNA export from nucleus positive regulation of RNA polymerase II transcriptional preinitiation complex assembly histone deubiquitination positive gravitropism auxin homeostasis nuclear proteasome complex multivesicular body late endosome membrane retromer complex cytosolic proteasome complex Transcription_related, Transcription factor: NF-YC proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process protein targeting to vacuole Endocytosis Ubiquitin_Proteasome_system, E2: UBC extrinsic component of membrane nuclear pore proteasome-activating ATPase activity transcription coactivator activity TBP-class protein binding phosphatidylinositol binding root development positive regulation of transcription, DNA-templated Proteasome Ubiquitin mediated proteolysis protein transport | details |
| TissueCFM001152 | Transcription_related, Transcription factor: NF-YC transferase activity, transferring phosphorus-containing groups Golgi to vacuole transport endosome to lysosome transport auxin homeostasis vesicle organization positive gravitropism Transcription_related, Transcription factor: Orphans retromer complex multivesicular body late endosome membrane Endocytosis protein targeting to vacuole phosphatidylinositol binding extrinsic component of membrane root development protein binding protein heterodimerization activity | details |
| TissueCFM001161 | sugar transmembrane transporter activity benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: bHLH carbohydrate transmembrane transport response to biotic stimulus defense response | details |
| TissueCFM001182 | Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, E2: UBC SNARE interactions in vesicular transport Ubiquitin mediated proteolysis nucleus | details |
| TissueCFM001223 | Cytochrome_P450, Cytochrome P450: CYP89A vernolate biosynthesis I poly-hydroxy fatty acids biosynthesis vindoline and vinblastine biosynthesis substrate-specific transmembrane transporter activity | details |
| TissueCFM001244 | regulation of fatty acid biosynthetic process barrier septum site selection regulation of phosphorylation regulation of nitrogen utilization calcium-dependent ATPase activity acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process chloroplast fission hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C3H cell wall biogenesis xyloglucan metabolic process regulation of catalytic activity xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM001327 | Cytochrome_P450, Cytochrome P450: CYP734A Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) Transcription_related, Transcription factor: NF-YC protein peptidyl-prolyl isomerization phosphorelay signal transduction system chaperone-mediated protein folding brassinosteroids inactivation secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: Orphans NF-kappa B signaling pathway FK506 binding peptidyl-prolyl cis-trans isomerase activity Plant hormone signal transduction protein heterodimerization activity | details |
| TissueCFM001343 | benzoyl-β-D-glucopyranose biosynthesis salicylate glucosides biosynthesis IV regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation anthocyanin-containing compound biosynthetic process acetylglutamate kinase regulator activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane chloroplast thylakoid peptidyl-tyrosine phosphorylation regulation of catalytic activity | details |
| TissueCFM001424 | Ubiquitin mediated proteolysis Transcription_related, Transcription factor: NF-YC Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM001494 | p53 signaling pathway Transcription_related, Transcription factor: NF-YC protein heterodimerization activity | details |
| TissueCFM001579 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: NF-YC L-valine degradation I RIG-I-like receptor signaling pathway phosphoprotein binding malonate-semialdehyde dehydrogenase (acetylating) activity methylmalonate-semialdehyde dehydrogenase (acylating) activity receptor activity abscisic acid binding protein phosphatase inhibitor activity aldehyde dehydrogenase (NAD) activity glutathione metabolic process abscisic acid-activated signaling pathway RNA secondary structure unwinding regulation of protein serine/threonine phosphatase activity negative regulation of catalytic activity Glutathione metabolism | details |
| TissueCFM001637 | Cell cycle - Caulobacter chloroplast thylakoid serine-type endopeptidase activity acetylglutamate kinase regulator activity regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation proteolysis anthocyanin-containing compound biosynthetic process chloroplastic endopeptidase Clp complex O-acetyltransferase activity amino acid transmembrane transporter activity cell wall organization or biogenesis amino acid transmembrane transport regulation of catalytic activity | details |
| TissueCFM001767 | Peroxisome regulation of protein kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: NF-YC protein kinase regulator activity protein glycosylation galactosyltransferase activity protein heterodimerization activity polysaccharide binding | details |
| TissueCFM001779 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity cellular aldehyde metabolic process regulation of mitotic cell cycle regulation of cyclin-dependent protein serine/threonine kinase activity carbohydrate transmembrane transport aldehyde dehydrogenase (NAD) activity Glycolysis / Gluconeogenesis Endocytosis transporter activity endomembrane system plastid | details |
| TissueCFM001836 | Cytochrome_P450, Cytochrome P450: CYP89A serine family amino acid biosynthetic process formate catabolic process vernolate biosynthesis I poly-hydroxy fatty acids biosynthesis Transcription_related, Transcription factor: NF-YC Glycosaminoglycan degradation formate dehydrogenase (NAD+) activity phosphoglycerate dehydrogenase activity | details |
Expression profiles
 Show details about module gene expression profiling |