TissueCFM000485's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-lysine catabolic process | 0.006771466 | GO:0019477 |
| response to temperature stimulus | 0.006771466 | GO:0009266 |
| lipid homeostasis | 0.008122158 | GO:0055088 |
| Mo-molybdopterin cofactor biosynthetic process | 0.008122158 | GO:0006777 |
| fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.008122158 | GO:0033539 |
| saccharopine dehydrogenase (NADP+, L-lysine-forming) activity | 0.010367445 | GO:0047130 |
| Mo-molybdopterin cofactor sulfurase activity | 0.010367445 | GO:0008265 |
| aldehyde-lyase activity | 0.010367445 | GO:0016832 |
| response to osmotic stress | 0.012026605 | GO:0006970 |
| Folate biosynthesis | 0.012655779 | KEGG pathway |
| Lysine degradation | 0.012655779 | KEGG pathway |
| acyl-CoA dehydrogenase activity | 0.013323664 | GO:0003995 |
| molybdenum ion binding | 0.013323664 | GO:0030151 |
| phosphogluconate dehydrogenase (decarboxylating) activity | 0.013323664 | GO:0004616 |
| oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor | 0.013323664 | GO:0052890 |
| fatty-acyl-CoA binding | 0.01554083 | GO:0000062 |
| Calvin-Benson-Bassham cycle | 0.021377737 | plantCyc |
| gluconeogenesis I | 0.021377737 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.021377737 | plantCyc |
| glycolysis IV (plant cytosol) | 0.021377737 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.021377737 | plantCyc |
| single-organism cellular process | 0.030211997 | GO:0044763 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002918 | AT3G06810 (0) | IBR3|IBA-RESPONSE 3 |
| CRO_T003916 | AT4G33150 (4.00E-25) | LKR/SDH|LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE; SDH|SACCHAROPINE DEHYDROGENASE |
| CRO_T010619 | AT5G61960 (1.00E-28) | AML1|MEI2-like protein 1 |
| CRO_T013279 | AT1G31480 (4.00E-77) | SGR2|SHOOT GRAVITROPISM 2 |
| CRO_T014941 | AT1G71180 (1.00E-14) | 6-phosphogluconate dehydrogenase family protein |
| CRO_T016368 | AT1G30910 (2.00E-22) | Molybdenum cofactor sulfurase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000484 | Folate biosynthesis argininosuccinate metabolic process response to temperature stimulus cytosolic proteasome complex proteasome regulatory particle, base subcomplex nuclear proteasome complex Mo-molybdopterin cofactor biosynthetic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly urea cycle L-arginine biosynthesis I (via L-ornithine) aldehyde-lyase activity argininosuccinate synthase activity Mo-molybdopterin cofactor sulfurase activity ER-associated ubiquitin-dependent protein catabolic process response to osmotic stress arginine biosynthetic process isoleucine-tRNA ligase activity phosphogluconate dehydrogenase (decarboxylating) activity molybdenum ion binding L-arginine biosynthesis II (acetyl cycle) proteasome-activating ATPase activity TBP-class protein binding Biosynthesis of amino acids Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Transcription_related, Transcription factor: WRKY | details |
Expression profiles
 Show details about module gene expression profiling |