TissueCFM000543's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosol | 0.005047103 | GO:0005829 |
| multi-organism process | 0.016915048 | GO:0051704 |
| response to benzoic acid | 0.016915048 | GO:0080021 |
| leucyl-tRNA aminoacylation | 0.016915048 | GO:0006429 |
| regulation of salicylic acid metabolic process | 0.016915048 | GO:0010337 |
| salicylic acid biosynthetic process | 0.016915048 | GO:0009697 |
| systemic acquired resistance | 0.016915048 | GO:0009627 |
| leucine-tRNA ligase activity | 0.017648068 | GO:0004823 |
| phosphoglycerate kinase activity | 0.017648068 | GO:0004618 |
| reductive pentose-phosphate cycle | 0.022541737 | GO:0019253 |
| plant-type hypersensitive response | 0.022541737 | GO:0009626 |
| response to nitrate | 0.022541737 | GO:0010167 |
| regulation of translational fidelity | 0.02434004 | GO:0006450 |
| NOD-like receptor signaling pathway | 0.029510682 | KEGG pathway |
| arginine biosynthetic process | 0.030406176 | GO:0006526 |
| glycerol ether metabolic process | 0.030406176 | GO:0006662 |
| Calvin-Benson-Bassham cycle | 0.030535486 | plantCyc |
| gluconeogenesis I | 0.030535486 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.030535486 | plantCyc |
| glycolysis IV (plant cytosol) | 0.030535486 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.030535486 | plantCyc |
| volatile benzenoid biosynthesis I (ester formation) | 0.030535486 | plantCyc |
| N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | 0.032328028 | GO:0003992 |
| aminoacyl-tRNA editing activity | 0.032328028 | GO:0002161 |
| cellular response to oxidative stress | 0.037614609 | GO:0034599 |
| sulfate assimilation | 0.037614609 | GO:0000103 |
| 2-Oxocarboxylic acid metabolism | 0.041199768 | KEGG pathway |
| Aminoacyl-tRNA biosynthesis | 0.041758663 | KEGG pathway |
| root development | 0.04678418 | GO:0048364 |
| glycolytic process | 0.04678418 | GO:0006096 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001096 | AT1G02860 (3.00E-119) | BAH1|BENZOIC ACID HYPERSENSITIVE 1; NLA|nitrogen limitation adaptation |
| CRO_T001466 | - | - |
| CRO_T010295 | AT3G56420 (6.00E-22) | Thioredoxin superfamily protein |
| CRO_T012894 | AT1G56190 (0) | Phosphoglycerate kinase family protein |
| CRO_T022404 | AT4G36470 (9.00E-113) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T023276 | AT1G09620 (0) | ATP binding; leucine-tRNA ligases; aminoacyl-tRNA ligases; nucleotide binding; ATP binding; aminoacyl-tRNA ligases |
| CRO_T033239 | AT3G52380 (6.00E-20) | CP33|chloroplast RNA-binding protein 33; PDE322|PIGMENT DEFECTIVE 322 |
| CRO_T033745 | AT1G80600 (2.00E-33) | TUP5|TUMOR PRONE 5; WIN1|HOPW1-1-interacting 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001131 | Aminoacyl-tRNA biosynthesis N-terminal peptidyl-methionine acetylation leucyl-tRNA aminoacylation phenylalanyl-tRNA aminoacylation regulation of translational fidelity DNA topological change phenylalanine-tRNA ligase complex Transcription_related, Transcription factor: M-type hydrolase activity, acting on acid anhydrides phenylalanine-tRNA ligase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity leucine-tRNA ligase activity aminoacyl-tRNA editing activity peptide alpha-N-acetyltransferase activity | details |
| TissueCFM001178 | cell-cell signaling production of siRNA involved in chromatin silencing by small RNA argininosuccinate metabolic process long-distance posttranscriptional gene silencing urea cycle NOD-like receptor signaling pathway transcription, RNA-templated production of siRNA involved in RNA interference Transcription_related, Transcription regulator: mTERF formation of glycosidic bonds, GlycosylTransferases: GTnc argininosuccinate synthase activity | details |
| TissueCFM001412 | cytosolic large ribosomal subunit | details |
| TissueCFM001414 | regulation of alternative mRNA splicing, via spliceosome Transcription_related, Transcription regulator: mTERF nucleic acid binding nucleotide binding seed germination cytoplasmic mRNA processing body | details |
| TissueCFM001468 | regulation of alternative mRNA splicing, via spliceosome nucleic acid binding nucleotide binding seed germination Transcription_related, Transcription regulator: mTERF amino acid binding Transcription_related, Transcription factor: ERF cytoplasmic mRNA processing body | details |
| TissueCFM001603 | identical protein binding defense response by callose deposition in cell wall response to molecule of bacterial origin regulation of seedling development detection of ethylene stimulus response to insect hydrogen peroxide biosynthetic process multi-organism process vasculature development response to gibberellin ethylene binding ethylene receptor activity cytokinin metabolic process regulation of stomatal movement negative regulation of ethylene-activated signaling pathway N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity ethylene-activated signaling pathway peptidyl-histidine phosphorylation ribosomal small subunit assembly arginine biosynthetic process photosynthesis, light reaction phosphorelay sensor kinase activity Transcription_related, Transcription factor: C3H Transcription_related, Transcription factor: Orphans response to heat signal transduction by protein phosphorylation Ubiquitin_Proteasome_system, E3 adaptor: SKP1 root development cell division defense response to bacterium response to auxin ubiquitin-dependent protein catabolic process response to abscisic acid | details |
| TissueCFM001620 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III leucyl-tRNA aminoacylation histone H3-K4 methylation regulation of translational fidelity leucine-tRNA ligase activity oxidoreductase activity aminoacyl-tRNA editing activity Aminoacyl-tRNA biosynthesis oxidation-reduction process Spliceosome | details |
| TissueCFM001697 | IMP dehydrogenase activity calcium-dependent ATPase activity guanosine ribonucleotides de novo biosynthesis adenosine nucleotides degradation I barrier septum site selection GMP biosynthetic process chloroplast fission Wnt signaling pathway nucleotide binding regulation of cell shape Endocytosis peptidyl-serine phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |