TissueCFM001131's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Aminoacyl-tRNA biosynthesis | 0.000485615 | KEGG pathway |
| N-terminal peptidyl-methionine acetylation | 0.009635513 | GO:0017196 |
| leucyl-tRNA aminoacylation | 0.009635513 | GO:0006429 |
| phenylalanyl-tRNA aminoacylation | 0.014980605 | GO:0006432 |
| regulation of translational fidelity | 0.015398381 | GO:0006450 |
| DNA topological change | 0.015398381 | GO:0006265 |
| phenylalanine-tRNA ligase complex | 0.017369469 | GO:0009328 |
| Transcription_related, Transcription factor: M-type | 0.018464802 | TF family |
| hydrolase activity, acting on acid anhydrides | 0.021503953 | GO:0016817 |
| phenylalanine-tRNA ligase activity | 0.021503953 | GO:0004826 |
| DNA topoisomerase type II (ATP-hydrolyzing) activity | 0.021503953 | GO:0003918 |
| DNA topoisomerase type I activity | 0.021503953 | GO:0003917 |
| leucine-tRNA ligase activity | 0.021503953 | GO:0004823 |
| aminoacyl-tRNA editing activity | 0.024630119 | GO:0002161 |
| peptide alpha-N-acetyltransferase activity | 0.034514004 | GO:0004596 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006184 | AT5G39840 (0) | ATP-dependent RNA helicase, mitochondrial, putative |
| CRO_T007503 | AT5G04740 (7.00E-55) | ACR12|ACT domain repeats 12 |
| CRO_T007678 | AT1G80410 (0) | EMB2753|EMBRYO DEFECTIVE 2753; OMA|OMISHA |
| CRO_T013807 | AT1G72550 (0) | tRNA synthetase beta subunit family protein |
| CRO_T016287 | - | - |
| CRO_T017267 | AT1G10820 (2.00E-19) | Protein of unknown function (DUF3755) |
| CRO_T019083 | AT1G58330 (7.00E-10) | ZW2|transcription factor-related |
| CRO_T023276 | AT1G09620 (0) | ATP binding; leucine-tRNA ligases; aminoacyl-tRNA ligases; nucleotide binding; ATP binding; aminoacyl-tRNA ligases |
| CRO_T026412 | AT5G55310 (1.00E-109) | TOP1|TOPOISOMERASE 1; TOP1BETA|DNA topoisomerase 1 beta |
| CRO_T027515 | AT1G29030 (0) | Apoptosis inhibitory protein 5 (API5) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000543 | cytosol multi-organism process response to benzoic acid leucyl-tRNA aminoacylation regulation of salicylic acid metabolic process salicylic acid biosynthetic process systemic acquired resistance leucine-tRNA ligase activity phosphoglycerate kinase activity reductive pentose-phosphate cycle plant-type hypersensitive response response to nitrate regulation of translational fidelity NOD-like receptor signaling pathway arginine biosynthetic process glycerol ether metabolic process Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) volatile benzenoid biosynthesis I (ester formation) N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity aminoacyl-tRNA editing activity cellular response to oxidative stress sulfate assimilation 2-Oxocarboxylic acid metabolism Aminoacyl-tRNA biosynthesis root development glycolytic process | details |
| TissueCFM000827 | regulation of alternative mRNA splicing, via spliceosome protein refolding Fanconi anemia pathway seed germination RNA degradation microtubule-based movement DNA repair | details |
| TissueCFM001468 | regulation of alternative mRNA splicing, via spliceosome nucleic acid binding nucleotide binding seed germination Transcription_related, Transcription regulator: mTERF amino acid binding Transcription_related, Transcription factor: ERF cytoplasmic mRNA processing body | details |
| TissueCFM001490 | Ubiquitin_Proteasome_system, DUB: JAMM protein-L-isoaspartate (D-aspartate) O-methyltransferase activity cytosol N-terminal peptidyl-methionine acetylation aging SCF complex assembly protein methylation xylem and phloem pattern formation peptide alpha-N-acetyltransferase activity amino acid binding seed germination vegetative to reproductive phase transition of meristem formation of translation preinitiation complex RNA transport translation initiation factor activity response to auxin response to salt stress | details |
| TissueCFM001620 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III leucyl-tRNA aminoacylation histone H3-K4 methylation regulation of translational fidelity leucine-tRNA ligase activity oxidoreductase activity aminoacyl-tRNA editing activity Aminoacyl-tRNA biosynthesis oxidation-reduction process Spliceosome | details |
| TissueCFM001655 | cell-cell signaling argininosuccinate metabolic process production of siRNA involved in chromatin silencing by small RNA long-distance posttranscriptional gene silencing response to high light intensity urea cycle production of siRNA involved in RNA interference response to hydrogen peroxide transcription, RNA-templated arginine biosynthetic process argininosuccinate synthase activity defense response to fungus response to heat ribosome biogenesis RNA-directed RNA polymerase activity DNA-directed RNA polymerase III complex mitochondrion RNA polymerase III activity | details |
| TissueCFM001656 | Transcription_related, Transcription regulator: mTERF negative regulation of microtubule depolymerization microtubule plus-end binding cortical microtubule organization protein stabilization mitotic nuclear division cell growth cell cortex spindle microtubule ribosome biogenesis RNA secondary structure unwinding phragmoplast | details |
| TissueCFM001689 | SCF complex assembly N-terminal peptidyl-methionine acetylation Transcription_related, Transcription factor: M-type xylem and phloem pattern formation peptide alpha-N-acetyltransferase activity amino acid binding vegetative to reproductive phase transition of meristem ribosomal large subunit assembly response to auxin | details |
Expression profiles
 Show details about module gene expression profiling |