TissueCFM001697's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| IMP dehydrogenase activity | 0.004514645 | GO:0003938 |
| calcium-dependent ATPase activity | 0.004514645 | GO:0030899 |
| guanosine ribonucleotides de novo biosynthesis | 0.005316398 | plantCyc |
| adenosine nucleotides degradation I | 0.007433065 | plantCyc |
| barrier septum site selection | 0.010385645 | GO:0000918 |
| GMP biosynthetic process | 0.010385645 | GO:0006177 |
| chloroplast fission | 0.015569261 | GO:0010020 |
| Wnt signaling pathway | 0.015569261 | KEGG pathway |
| nucleotide binding | 0.017283573 | GO:0000166 |
| regulation of cell shape | 0.018674832 | GO:0008360 |
| Endocytosis | 0.020740617 | KEGG pathway |
| peptidyl-serine phosphorylation | 0.039175002 | GO:0018105 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008351 | AT5G24020 (2.00E-131) | ARC11|ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11 |
| CRO_T018080 | AT5G43320 (3.00E-35) | ckl8|casein kinase I-like 8 |
| CRO_T028856 | AT1G16350 (0) | Aldolase-type TIM barrel family protein |
| CRO_T032428 | AT4G20880 (2.00E-12) | ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) |
| CRO_T033239 | AT3G52380 (6.00E-20) | CP33|chloroplast RNA-binding protein 33; PDE322|PIGMENT DEFECTIVE 322 |
| CRO_T033305 | AT3G09630 (4.00E-125) | Ribosomal protein L4/L1 family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000446 | cytosolic large ribosomal subunit Ribosome retromer complex multivesicular body auxin homeostasis positive gravitropism Golgi to vacuole transport translation vesicle organization magnesium ion transmembrane transporter activity phosphatidylinositol binding structural constituent of ribosome protein targeting to vacuole magnesium ion transport magnesium ion transmembrane transport Endocytosis extrinsic component of membrane root development | details |
| TissueCFM000543 | cytosol multi-organism process response to benzoic acid leucyl-tRNA aminoacylation regulation of salicylic acid metabolic process salicylic acid biosynthetic process systemic acquired resistance leucine-tRNA ligase activity phosphoglycerate kinase activity reductive pentose-phosphate cycle plant-type hypersensitive response response to nitrate regulation of translational fidelity NOD-like receptor signaling pathway arginine biosynthetic process glycerol ether metabolic process Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) volatile benzenoid biosynthesis I (ester formation) N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity aminoacyl-tRNA editing activity cellular response to oxidative stress sulfate assimilation 2-Oxocarboxylic acid metabolism Aminoacyl-tRNA biosynthesis root development glycolytic process | details |
| TissueCFM000589 | Cytochrome_P450, Cytochrome P450: CYP94D extended VTC2 cycle pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage VTC2 cycle endoplasmic reticulum tubular network organization intracellular protein transport barrier septum site selection uracil salvage UMP biosynthetic process uracil phosphoribosyltransferase activity calcium-dependent ATPase activity GDP-D-glucose phosphorylase activity pyrimidine nucleoside salvage pyrimidine salvage pathway chloroplast fission L-ascorbate biosynthesis I (L-galactose pathway) Ascorbate and aldarate metabolism Autophagy - yeast Pyrimidine metabolism aromatase activity uridine kinase activity glucose metabolic process endoplasmic reticulum tubular network vesicle docking Transcription_related, Transcription factor: M-type vesicle fusion | details |
| TissueCFM001036 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage Cytochrome_P450, Cytochrome P450: CYP94D barrier septum site selection formate catabolic process uracil salvage serine family amino acid biosynthetic process pyrimidine salvage pathway formate dehydrogenase (NAD+) activity uracil phosphoribosyltransferase activity calcium-dependent ATPase activity UMP biosynthetic process Transcription_related, Transcription factor: OFP pyrimidine nucleoside salvage phosphoglycerate dehydrogenase activity chloroplast fission Wnt signaling pathway uridine kinase activity aromatase activity ubiquitin binding regulation of cell shape Pyrimidine metabolism Ras signaling pathway Endocytosis Transcription_related, Transcription factor: M-type | details |
| TissueCFM001198 | L-lysine biosynthesis VI diaminopimelate epimerase activity chromatin silencing regulation of cell shape lysine biosynthetic process via diaminopimelate Wnt signaling pathway Endocytosis Necroptosis peptidyl-serine phosphorylation nucleosome nuclear chromatin Biosynthesis of amino acids | details |
| TissueCFM001244 | regulation of fatty acid biosynthetic process barrier septum site selection regulation of phosphorylation regulation of nitrogen utilization calcium-dependent ATPase activity acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process chloroplast fission hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C3H cell wall biogenesis xyloglucan metabolic process regulation of catalytic activity xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM001249 | calcium-dependent ATPase activity galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity L-ascorbate biosynthesis I (L-galactose pathway) barrier septum site selection Ascorbate and aldarate metabolism Viral carcinogenesis D-arabinono-1,4-lactone oxidase activity chloroplast fission chloroplast envelope nucleosome assembly response to water deprivation phosphoprotein phosphatase activity protein homodimerization activity protein heterodimerization activity | details |
| TissueCFM001412 | cytosolic large ribosomal subunit | details |
| TissueCFM001414 | regulation of alternative mRNA splicing, via spliceosome Transcription_related, Transcription regulator: mTERF nucleic acid binding nucleotide binding seed germination cytoplasmic mRNA processing body | details |
| TissueCFM001468 | regulation of alternative mRNA splicing, via spliceosome nucleic acid binding nucleotide binding seed germination Transcription_related, Transcription regulator: mTERF amino acid binding Transcription_related, Transcription factor: ERF cytoplasmic mRNA processing body | details |
| TissueCFM001700 | cytosolic large ribosomal subunit nuclear pore central transport channel Ribosome translation nuclear pore organization protein targeting to nuclear inner membrane NLS-bearing protein import into nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore structural constituent of ribosome nucleolus RNA transport | details |
| TissueCFM001821 | ribonucleoside-diphosphate reductase complex MCM complex nuclear membrane nuclear periphery THO complex protein import into nucleus, translocation ribosomal protein import into nucleus deoxyribonucleotide biosynthetic process protein import into nucleus, docking NLS-bearing protein import into nucleus DNA replication initiation DNA duplex unwinding ATP-dependent helicase activity DNA helicase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor DNA replication origin binding nuclear localization sequence binding Ran GTPase binding cytoplasm DNA replication chromatin binding protein transporter activity Purine metabolism RNA transport | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
Expression profiles
 Show details about module gene expression profiling |