TissueCFM000681's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.1.3: MAP2K | 0.01230666 | kinase family |
| 1-phosphatidylinositol 4-kinase activity | 0.025949537 | GO:0004430 |
| MAP kinase kinase activity | 0.025949537 | GO:0004708 |
| 3-phosphoinositide biosynthesis | 0.030223419 | plantCyc |
| chlorogenic acid biosynthesis I | 0.030223419 | plantCyc |
| chlorogenic acid biosynthesis II | 0.030223419 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.030223419 | plantCyc |
| MAPK signaling pathway - plant | 0.032039655 | KEGG pathway |
| receptor signaling protein serine/threonine kinase activity | 0.040323031 | GO:0004702 |
| Phenylpropanoid biosynthesis | 0.045477229 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000729 | AT2G38800 (9.00E-12) | Plant calmodulin-binding protein-related |
| CRO_T009800 | - | - |
| CRO_T011158 | AT4G31080 (2.00E-99) | Protein of unknown function (DUF2296) |
| CRO_T011847 | AT1G20670 (2.00E-95) | DNA-binding bromodomain-containing protein |
| CRO_T014328 | AT5G48930 (8.00E-33) | HCT|hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
| CRO_T020175 | AT3G21220 (4.00E-127) | ATMEK5|MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5; MEK5|MAP KINASE KINASE 5 |
| CRO_T026116 | AT2G26680 (2.00E-118) | |
| CRO_T026699 | AT5G02860 (6.00E-30) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T029189 | AT5G24240 (0) | Phosphatidylinositol 3- and 4-kinase ; Ubiquitin family protein |
| CRO_T032485 | AT3G56750 (1.00E-146) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000433 | N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity rRNA (cytosine-N4-)-methyltransferase activity spermine:oxygen oxidoreductase (spermidine-forming) activity N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity spermine and spermidine degradation III Arginine and proline metabolism rRNA base methylation | details |
| TissueCFM000545 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K L-glutamine degradation I L-histidine biosynthesis MAP kinase kinase activity C-19 gibberellin 2-beta-dioxygenase activity transferase activity, transferring pentosyl groups triglyceride lipase activity gibberellin catabolic process receptor signaling protein serine/threonine kinase activity triacylglycerol degradation | details |
| TissueCFM000718 | transferase activity, transferring phosphorus-containing groups Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV Transcription_related, Transcription factor: Trihelix N-Glycan biosynthesis methyltransferase activity methylation | details |
| TissueCFM001025 | methylation | details |
| TissueCFM001098 | seed maturation regulation of shoot system development regulation of seed germination Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB transcription regulatory region DNA binding embryo development ending in seed dormancy | details |
| TissueCFM001103 | triacylglycerol degradation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII phospholipid translocation lipid catabolic process phospholipid-translocating ATPase activity | details |
| TissueCFM001432 | protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity mRNA surveillance pathway Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: mTERF signal transduction | details |
| TissueCFM001503 | phytol metabolic process amino acid import 1-phosphatidylinositol binding 1-phosphatidylinositol 4-kinase activity clathrin binding diacylglycerol O-acyltransferase activity cellular protein modification process clathrin coat assembly chlorophyll a degradation II Endocytosis 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis diacylglycerol and triacylglycerol biosynthesis clathrin-coated vesicle amino acid transmembrane transporter activity plastoglobule phosphatidylinositol phosphorylation amino acid transmembrane transport response to salt stress protein autophosphorylation protein transport | details |
| TissueCFM001561 | N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermine:oxygen oxidoreductase (spermidine-forming) activity spermine and spermidine degradation III Arginine and proline metabolism | details |
| TissueCFM001724 | RNA lariat debranching enzyme activity cellular protein localization Transcription_related, Transcription factor: WRKY | details |
| TissueCFM001745 | riboflavin synthase complex chloroplast stroma flavin biosynthesis I (bacteria and plants) L-lysine biosynthesis VI L,L-diaminopimelate aminotransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity systemic acquired resistance, salicylic acid mediated signaling pathway lysine biosynthetic process via diaminopimelate riboflavin biosynthetic process Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: WRKY Riboflavin metabolism response to cytokinin | details |
| TissueCFM001849 | protein K48-linked deubiquitination positive regulation of intracellular protein transport protein K63-linked deubiquitination positive regulation of vacuole organization cellular response to starvation ethylene biosynthesis I (plants) intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM Endocytosis dihydrokaempferol 4-reductase activity | details |
Expression profiles
 Show details about module gene expression profiling |