TissueCFM000927's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002437583 | cazy family |
| Transcription_related, Transcription factor: CPP | 0.002437583 | TF family |
| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity | 0.002955301 | GO:0042281 |
| GDP-mannose biosynthesis | 0.007465319 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.007465319 | plantCyc |
| protein N-glycosylation (eukaryotic, high mannose) | 0.007465319 | plantCyc |
| regulation of mitotic metaphase/anaphase transition | 0.007817416 | GO:0030071 |
| oligosaccharide-lipid intermediate biosynthetic process | 0.007817416 | GO:0006490 |
| protein N-linked glycosylation | 0.010418601 | GO:0006487 |
| Transcription_related, Transcription factor: LOB | 0.010703199 | TF family |
| anaphase-promoting complex | 0.014165434 | GO:0005680 |
| DNA biosynthetic process | 0.016263435 | GO:0071897 |
| DNA-directed DNA polymerase activity | 0.016707157 | GO:0003887 |
| nucleotidyltransferase activity | 0.016707157 | GO:0016779 |
| biosynthetic process | 0.019918886 | GO:0009058 |
| DNA replication | 0.019918886 | KEGG pathway |
| Fructose and mannose metabolism | 0.038277249 | KEGG pathway |
| N-Glycan biosynthesis | 0.038277249 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.04550025 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002243 | AT2G44660 (2.00E-116) | ALG6, ALG8 glycosyltransferase family |
| CRO_T007925 | AT2G20110 (4.00E-30) | Tesmin/TSO1-like CXC domain-containing protein |
| CRO_T008787 | AT1G74910 (0) | ADP-glucose pyrophosphorylase family protein |
| CRO_T016446 | AT2G42120 (0) | POLD2|DNA polymerase delta small subunit |
| CRO_T020760 | AT3G60850 (0) | unknown protein |
| CRO_T028150 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000269 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) structural constituent of ribosome cytoplasmic translation poly(A) RNA binding Ribosome mitotic recombination-dependent replication fork processing uridylyltransferase activity chromosome organization involved in meiotic cell cycle DNA recombinase assembly reciprocal meiotic recombination response to ionizing radiation mitotic recombination strand invasion spliceosomal complex assembly cytosolic large ribosomal subunit translation potassium ion binding recombinase activity pyruvate kinase activity DNA-dependent ATPase activity four-way junction DNA binding Rho guanyl-nucleotide exchange factor activity endodeoxyribonuclease activity Transcription_related, Transcription factor: LOB | details |
| TissueCFM000281 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: LOB response to glucose defense response to fungus cell surface receptor signaling pathway response to salt stress response to abscisic acid zinc ion binding | details |
| TissueCFM000366 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity inosine-5'-phosphate biosynthesis II 'de novo' AMP biosynthetic process protein tetramerization Transcription_related, Transcription factor: LOB 'de novo' IMP biosynthetic process adenosine ribonucleotides de novo biosynthesis response to stress helicase activity unfolded protein binding | details |
| TissueCFM000548 | trans-lycopene biosynthesis II (plants) anaphase-promoting complex Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III regulation of mitotic metaphase/anaphase transition cytoplasm ribosomal large subunit assembly cytosolic large ribosomal subunit | details |
| TissueCFM000693 | pentose phosphate pathway (oxidative branch) I UDP-glucose biosynthesis ER to Golgi transport vesicle stachyose degradation sucrose biosynthesis II uridylyltransferase activity glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: LOB Rho guanyl-nucleotide exchange factor activity structural constituent of ribosome pentose-phosphate shunt maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) glucose metabolic process poly(A) RNA binding cytoplasmic translation DNA metabolic process | details |
| TissueCFM000761 | homospermidine biosynthesis hypusine biosynthesis deoxyhypusine synthase activity homospermidine synthase (spermidine-specific) activity triglyceride lipase activity peptide binding deoxyhypusine biosynthetic process from spermidine peptidyl-lysine modification to peptidyl-hypusine peptidyl-prolyl cis-trans isomerase activity viral nucleocapsid intracellular ribonucleoprotein complex embryo sac development Transcription_related, Transcription factor: LOB Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein peptidyl-prolyl isomerization | details |
| TissueCFM001132 | alpha-1,4-glucan synthase activity starch synthase activity starch biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP amylopectin biosynthetic process glycogen (starch) synthase activity starch biosynthetic process Transcription_related, Transcription factor: LOB amyloplast Starch and sucrose metabolism methyltransferase activity | details |
| TissueCFM001565 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Legionellosis nucleocytoplasmic transport response to endoplasmic reticulum stress glutathione transferase activity Ran GTPase binding protein serine/threonine phosphatase activity nucleotidyltransferase activity protein transporter activity translation elongation factor activity protein disulfide isomerase activity Fructose and mannose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |