TissueCFM000558's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Two-component system | 0.001595745 | KEGG pathway |
| linoleate biosynthesis I (plants) | 0.003899268 | plantCyc |
| phospholipid desaturation | 0.003899268 | plantCyc |
| glycolipid desaturation | 0.008761046 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.013051924 | cazy family |
| sugar:proton symporter activity | 0.029470152 | GO:0005351 |
| glucose transmembrane transporter activity | 0.029470152 | GO:0005355 |
| cell morphogenesis | 0.030829539 | GO:0000902 |
| glucose transmembrane transport | 0.03535457 | GO:1904659 |
| proton transport | 0.03535457 | GO:0015992 |
| glucose import | 0.03535457 | GO:0046323 |
| response to cytokinin | 0.03535457 | GO:0009735 |
| 2-alkenal reductase [NAD(P)] activity | 0.037229719 | GO:0032440 |
| mitochondrial large ribosomal subunit | 0.046862924 | GO:0005762 |
| lipid metabolic process | 0.049204256 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003816 | AT3G11170 (5.00E-17) | FAD7|fatty acid desaturase 7; FADD|FATTY ACID DESATURASE D |
| CRO_T005021 | AT1G64180 (2.00E-82) | intracellular protein transport protein USO1-related |
| CRO_T006029 | AT5G40950 (4.00E-23) | RPL27|ribosomal protein large subunit 27 |
| CRO_T009515 | AT2G24020 (5.00E-26) | Uncharacterised BCR, YbaB family COG0718 |
| CRO_T018971 | AT1G77210 (8.00E-24) | AtSTP14|sugar transport protein 14 |
| CRO_T025968 | AT4G18530 (3.00E-99) | Protein of unknown function (DUF707) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001122 | ornithine biosynthetic process glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity L-ornithine biosynthesis I L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process 2-Oxocarboxylic acid metabolism chloroplast stroma phosphatidylcholine acyl editing phospholipases mitochondrial large ribosomal subunit O-acyltransferase activity Transcription_related, Transcription factor: bZIP thylakoid response to cytokinin | details |
| TissueCFM001583 | glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity 3'(2'),5'-bisphosphate nucleotidase activity D-myo-inositol (1,4,5)-trisphosphate degradation L-arginine biosynthesis II (acetyl cycle) L-ornithine biosynthesis I Sulfur metabolism ornithine biosynthetic process 2-Oxocarboxylic acid metabolism phosphate-containing compound metabolic process arginine biosynthetic process glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity 2-alkenal reductase [NAD(P)] activity magnesium ion binding | details |
| TissueCFM001584 | plasma membrane Riboflavin metabolism Sulfur metabolism D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) 3'(2'),5'-bisphosphate nucleotidase activity chloroplast accumulation movement phosphate-containing compound metabolic process chloroplast avoidance movement glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TissueCFM001690 | Ribosome translation Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase structural constituent of ribosome geraniol and geranial biosynthesis cell morphogenesis protein serine/threonine/tyrosine kinase activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Phenylpropanoid biosynthesis lignin biosynthetic process cell wall organization or biogenesis O-acetyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |