TissueCFM001690's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 2.57E-05 | KEGG pathway |
| translation | 0.000388715 | GO:0006412 |
| Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase | 0.000620531 | kinase family |
| structural constituent of ribosome | 0.0008622 | GO:0003735 |
| geraniol and geranial biosynthesis | 0.011154708 | plantCyc |
| cell morphogenesis | 0.012157011 | GO:0000902 |
| protein serine/threonine/tyrosine kinase activity | 0.015794952 | GO:0004712 |
| sinapyl alcohol dehydrogenase activity | 0.017100582 | GO:0052747 |
| cinnamyl-alcohol dehydrogenase activity | 0.017100582 | GO:0045551 |
| Phenylpropanoid biosynthesis | 0.020976835 | KEGG pathway |
| lignin biosynthetic process | 0.028316106 | GO:0009809 |
| cell wall organization or biogenesis | 0.028796214 | GO:0071554 |
| O-acetyltransferase activity | 0.037807201 | GO:0016413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005021 | AT1G64180 (2.00E-82) | intracellular protein transport protein USO1-related |
| CRO_T005318 | AT2G43030 (3.00E-37) | Ribosomal protein L3 family protein |
| CRO_T006755 | AT1G75350 (1.00E-43) | emb2184|embryo defective 2184 |
| CRO_T011702 | AT3G19450 (9.00E-115) | CAD4|CINNAMYL ALCOHOL DEHYDROGENASE 4 |
| CRO_T023616 | AT2G33450 (1.00E-43) | PRPL28|plastid ribosomal protein L28 |
| CRO_T025257 | AT3G53570 (9.00E-38) | AFC1|FUS3-complementing gene 1 |
| CRO_T030389 | AT2G30900 (2.00E-103) | TBL43|TRICHOME BIREFRINGENCE-LIKE 43 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000061 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis heat shock protein binding cinnamyl-alcohol dehydrogenase activity aldehyde dehydrogenase (NAD) activity sinapyl alcohol dehydrogenase activity lignin biosynthetic process Glycolysis / Gluconeogenesis Phenylpropanoid biosynthesis oxidation-reduction process unfolded protein binding | details |
| TissueCFM000495 | Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase negative regulation of cellular process protein serine/threonine/tyrosine kinase activity Transcription_related, Transcription factor: bZIP Plant hormone signal transduction Ubiquitin_Proteasome_system, E3: U-box | details |
| TissueCFM000558 | Two-component system linoleate biosynthesis I (plants) phospholipid desaturation glycolipid desaturation formation of glycosidic bonds, GlycosylTransferases: GTnc sugar:proton symporter activity glucose transmembrane transporter activity cell morphogenesis glucose transmembrane transport proton transport glucose import response to cytokinin 2-alkenal reductase [NAD(P)] activity mitochondrial large ribosomal subunit lipid metabolic process | details |
| TissueCFM000729 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage regulation of phosphorylation regulation of nitrogen utilization uracil salvage regulation of fatty acid biosynthetic process uracil phosphoribosyltransferase activity acetylglutamate kinase regulator activity UMP biosynthetic process anthocyanin-containing compound biosynthetic process pyrimidine nucleoside salvage pyrimidine salvage pathway formation of glycosidic bonds, GlycosylTransferases: GTnc uridine kinase activity Pyrimidine metabolism vindoline and vinblastine biosynthesis cell wall organization or biogenesis regulation of catalytic activity response to cytokinin | details |
| TissueCFM001215 | Aminoacyl-tRNA biosynthesis threonyl-tRNA aminoacylation valyl-tRNA aminoacylation Photosynthesis - antenna proteins valine-tRNA ligase activity threonine-tRNA ligase activity benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis regulation of translational fidelity photosynthesis, light harvesting in photosystem I photosynthesis light reactions aminoacyl-tRNA editing activity cinnamyl-alcohol dehydrogenase activity pigment binding sinapyl alcohol dehydrogenase activity Glycolysis / Gluconeogenesis aldehyde dehydrogenase (NAD) activity response to light stimulus lignin biosynthetic process protein-chromophore linkage Phenylpropanoid biosynthesis chlorophyll binding embryo development ending in seed dormancy | details |
| TissueCFM001336 | chlorophyll a degradation II Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) translational termination plastid organization recognition of pollen protein serine/threonine kinase activity ribosome binding heat shock protein binding nucleotide binding protein serine/threonine/tyrosine kinase activity translation release factor activity, codon specific endonuclease activity protein phosphorylation RNA processing nucleic acid phosphodiester bond hydrolysis microtubule-based movement | details |
| TissueCFM001382 | protochlorophyllide reductase activity organic acid transmembrane transporter activity pyruvate transmembrane transporter activity NADPH dehydrogenase activity GTP cyclohydrolase II activity thiamine-phosphate diphosphorylase activity blue light photoreceptor activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity cytoplasmic side of plasma membrane chloroplast envelope cell surface flavin biosynthesis I (bacteria and plants) geraniol and geranial biosynthesis thiamine diphosphate biosynthesis IV (eukaryotes) thiamine biosynthetic process blue light signaling pathway regulation of proton transport chloroplast avoidance movement negative regulation of anion channel activity by blue light plasma membrane pyruvate transport phototropism chloroplast accumulation movement regulation of stomatal movement riboflavin biosynthetic process thylakoid membrane organization chloroplast membrane cinnamyl-alcohol dehydrogenase activity sinapyl alcohol dehydrogenase activity Riboflavin metabolism Porphyrin and chlorophyll metabolism phosphorelay sensor kinase activity Phenylpropanoid biosynthesis signal transduction by protein phosphorylation vegetative to reproductive phase transition of meristem lignin biosynthetic process phosphorelay signal transduction system protein peptidyl-prolyl isomerization FMN binding identical protein binding peptidyl-prolyl cis-trans isomerase activity protein autophosphorylation | details |
| TissueCFM001637 | Cell cycle - Caulobacter chloroplast thylakoid serine-type endopeptidase activity acetylglutamate kinase regulator activity regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation proteolysis anthocyanin-containing compound biosynthetic process chloroplastic endopeptidase Clp complex O-acetyltransferase activity amino acid transmembrane transporter activity cell wall organization or biogenesis amino acid transmembrane transport regulation of catalytic activity | details |
| TissueCFM001747 | geraniol and geranial biosynthesis Phenylpropanoid biosynthesis sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity lignin biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |