TissueCFM001122's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ornithine biosynthetic process | 3.99E-06 | GO:0006592 |
| glutamate N-acetyltransferase activity | 5.60E-06 | GO:0004358 |
| acetyl-CoA:L-glutamate N-acetyltransferase activity | 7.00E-06 | GO:0004042 |
| L-ornithine biosynthesis I | 1.37E-05 | plantCyc |
| L-arginine biosynthesis II (acetyl cycle) | 1.60E-05 | plantCyc |
| arginine biosynthetic process | 5.68E-05 | GO:0006526 |
| 2-Oxocarboxylic acid metabolism | 9.90E-05 | KEGG pathway |
| chloroplast stroma | 0.000189652 | GO:0009570 |
| phosphatidylcholine acyl editing | 0.01974709 | plantCyc |
| phospholipases | 0.01974709 | plantCyc |
| mitochondrial large ribosomal subunit | 0.02122493 | GO:0005762 |
| O-acyltransferase activity | 0.022800776 | GO:0008374 |
| Transcription_related, Transcription factor: bZIP | 0.024739944 | TF family |
| thylakoid | 0.03294639 | GO:0009579 |
| response to cytokinin | 0.042430947 | GO:0009735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000048 | AT2G37500 (1.00E-89) | arginine biosynthesis protein ArgJ family |
| CRO_T000595 | AT2G37500 (2.00E-57) | arginine biosynthesis protein ArgJ family |
| CRO_T006029 | AT5G40950 (4.00E-23) | RPL27|ribosomal protein large subunit 27 |
| CRO_T011812 | AT1G15590 (4.00E-15) | |
| CRO_T012649 | AT4G19860 (3.00E-102) | alpha/beta-Hydrolases superfamily protein |
| CRO_T023593 | AT4G02640 (3.00E-17) | ATBZIP10|basic leucine zipper 10 |
| CRO_T029426 | AT1G70200 (6.00E-50) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000558 | Two-component system linoleate biosynthesis I (plants) phospholipid desaturation glycolipid desaturation formation of glycosidic bonds, GlycosylTransferases: GTnc sugar:proton symporter activity glucose transmembrane transporter activity cell morphogenesis glucose transmembrane transport proton transport glucose import response to cytokinin 2-alkenal reductase [NAD(P)] activity mitochondrial large ribosomal subunit lipid metabolic process | details |
| TissueCFM000666 | formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination plastid organization glycerol catabolic process gluconeogenesis glyceraldehyde-3-phosphate biosynthetic process triose-phosphate isomerase activity phosphate-containing compound metabolic process Transcription_related, Transcription factor: bZIP inorganic diphosphatase activity translation release factor activity, codon specific Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) ribosome binding Cell cycle - Caulobacter glycolytic process RNA processing | details |
| TissueCFM000901 | aspartate carbamoyltransferase activity delta24-sterol reductase activity phenylalanine ammonia-lyase activity organic acid transmembrane transporter activity homoserine dehydrogenase activity L-homoserine biosynthesis phenylpropanoid biosynthesis, initial reactions UMP biosynthesis I trans-cinnamoyl-CoA biosynthesis organic acid transmembrane transport threonine biosynthetic process cinnamic acid biosynthetic process lignin metabolic process L-phenylalanine catabolic process pyrimidine ribonucleotide biosynthetic process urea cycle vacuole organization isoleucine biosynthetic process methionine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process O-acyltransferase activity plant-type secondary cell wall biogenesis Lysosome Phenylalanine metabolism Pyrimidine metabolism Steroid biosynthesis cellular amino acid metabolic process | details |
| TissueCFM001016 | nucleobase-containing compound biosynthetic process Pyrimidine metabolism Viral carcinogenesis farnesylcysteine salvage pathway pyrimidine deoxyribonucleosides salvage phosphate-containing compound metabolic process nucleosome assembly geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phosphatidylcholine acyl editing phospholipases very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II response to water deprivation | details |
| TissueCFM001160 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family delta24-sterol reductase activity Transcription_related, Transcription factor: bZIP phosphatidylcholine acyl editing phospholipases plant sterol biosynthesis lignin metabolic process Steroid biosynthesis 5S rRNA binding O-acyltransferase activity meristem structural organization plant-type secondary cell wall biogenesis unidimensional cell growth brassinosteroid biosynthetic process protein autophosphorylation lipid metabolic process | details |
| TissueCFM001272 | O-acyltransferase activity vacuolar transport vacuole organization phosphatidylcholine acyl editing phospholipases formation of glycosidic bonds, GlycosylTransferases: GTnc membrane coat Lysosome vesicle-mediated transport lipid metabolic process intracellular protein transport Endocytosis | details |
| TissueCFM001343 | benzoyl-β-D-glucopyranose biosynthesis salicylate glucosides biosynthesis IV regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation anthocyanin-containing compound biosynthetic process acetylglutamate kinase regulator activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane chloroplast thylakoid peptidyl-tyrosine phosphorylation regulation of catalytic activity | details |
| TissueCFM001376 | Transcriptional misregulation in cancers phosphatidylcholine acyl editing phospholipases O-acyltransferase activity lipid metabolic process protein heterodimerization activity chromosome nucleosome | details |
| TissueCFM001481 | regulation of double-strand break repair via homologous recombination phosphatidylcholine acyl editing phospholipases cytoplasmic microtubule organization O-acyltransferase activity microtubule-severing ATPase activity single-organism process unfolded protein binding Ubiquitin_Proteasome_system, E3 adaptor: DWD lipid metabolic process protein folding | details |
| TissueCFM001520 | Purine metabolism galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity delta24-sterol reductase activity flavin adenine dinucleotide binding 5'-nucleotidase activity D-arabinono-1,4-lactone oxidase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor O-acyltransferase activity Ascorbate and aldarate metabolism Steroid biosynthesis lignin metabolic process plant-type secondary cell wall biogenesis oxidation-reduction process deoxyribonucleotide biosynthetic process adenosine nucleotides degradation I guanosine nucleotides degradation I guanosine nucleotides degradation II L-ascorbate biosynthesis I (L-galactose pathway) plant sterol biosynthesis pyrimidine salvage pathway phosphatidylcholine acyl editing phospholipases brassinosteroid biosynthetic process unidimensional cell growth oxidoreductase activity, acting on CH-OH group of donors DNA replication | details |
| TissueCFM001556 | galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity D-arabinono-1,4-lactone oxidase activity O-acyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-ascorbate biosynthesis I (L-galactose pathway) phosphatidylcholine acyl editing phospholipases vacuolar transport vacuole organization Ascorbate and aldarate metabolism Lysosome membrane coat Endocytosis flavin adenine dinucleotide binding vesicle-mediated transport lipid metabolic process | details |
| TissueCFM001583 | glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity 3'(2'),5'-bisphosphate nucleotidase activity D-myo-inositol (1,4,5)-trisphosphate degradation L-arginine biosynthesis II (acetyl cycle) L-ornithine biosynthesis I Sulfur metabolism ornithine biosynthetic process 2-Oxocarboxylic acid metabolism phosphate-containing compound metabolic process arginine biosynthetic process glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity 2-alkenal reductase [NAD(P)] activity magnesium ion binding | details |
| TissueCFM001646 | proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING zinc ion binding delta24-sterol reductase activity protein ubiquitination integral component of membrane lignin metabolic process 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis plant sterol biosynthesis Steroid biosynthesis plant-type secondary cell wall biogenesis plasma membrane unidimensional cell growth protein polyubiquitination brassinosteroid biosynthetic process Peroxisome protein ubiquitination involved in ubiquitin-dependent protein catabolic process vacuolar membrane oxidoreductase activity, acting on CH-OH group of donors | details |
Expression profiles
 Show details about module gene expression profiling |