TissueCFM000657's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Spliceosome | 0.003744259 | KEGG pathway |
| lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) | 0.004253496 | plantCyc |
| regulation of DNA endoreduplication | 0.005199793 | GO:0032875 |
| inositol-1,4,5-trisphosphate 3-kinase activity | 0.005397871 | GO:0008440 |
| molybdenum cofactor biosynthesis | 0.00637233 | plantCyc |
| phloem or xylem histogenesis | 0.011034712 | GO:0010087 |
| Transcription_related, Transcription factor: C3H | 0.011995624 | TF family |
| Inositol phosphate metabolism | 0.031700873 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.039929341 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006813 | - | - |
| CRO_T008582 | AT1G78770 (0) | APC6|anaphase promoting complex 6 |
| CRO_T008861 | - | - |
| CRO_T015386 | AT5G61760 (9.00E-105) | ATIPK2BETA|INOSITOL POLYPHOSPHATE KINASE 2 BETA |
| CRO_T023020 | AT5G11760 (2.00E-10) | unknown protein |
| CRO_T024431 | AT2G28720 (3.00E-43) | Histone superfamily protein |
| CRO_T027091 | AT3G48440 (7.00E-10) | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| CRO_T029317 | AT1G06530 (2.00E-09) | PMD2|peroxisomal and mitochondrial division factor 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000021 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TissueCFM000554 | molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding nucleotide binding carbohydrate metabolic process | details |
| TissueCFM001224 | protein demethylation purine nucleobase catabolic process ureide catabolic process allantoin catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) urate degradation to allantoin I protein homooligomerization molybdenum cofactor biosynthesis ureidoglycine aminohydrolase activity formation of glycosidic bonds, GlycosylTransferases: GTnc carboxylic ester hydrolase activity | details |
| TissueCFM001225 | nucleotide binding ureide catabolic process purine nucleobase catabolic process allantoin catabolic process Spliceosome allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) ureidoglycine aminohydrolase activity molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding Transcription_related, Transcription factor: C3H | details |
| TissueCFM001351 | Pathogenic Escherichia coli infection | details |
| TissueCFM001435 | pre-mRNA 3'-splice site binding poly-pyrimidine tract binding Transcription_related, Transcription regulator: Jumonji commitment complex nuclear speck U2AF mRNA processing U2-type prespliceosome proteasome complex Proteasome Spliceosome | details |
| TissueCFM001661 | lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) inositol-1,4,5-trisphosphate 3-kinase activity RNA binding nucleotide binding sugar:proton symporter activity proton transport carbohydrate transport Inositol phosphate metabolism Spliceosome | details |
| TissueCFM001731 | ethylene biosynthesis I (plants) cellular response to starvation regulation of plant-type cell wall cellulose biosynthetic process plant-type cell wall modification involved in multidimensional cell growth plasmodesma organization maintenance of root meristem identity response to glucose chromosome segregation condensed chromosome outer kinetochore cellulose microfibril organization Endocytosis cell differentiation spindle microtubule response to light stimulus unidimensional cell growth cellulose biosynthetic process cell division formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C3H response to abscisic acid | details |
| TissueCFM001758 | stomatal complex patterning stomatal complex development positive regulation of G2/M transition of mitotic cell cycle NEDD8-specific protease activity DNA-directed RNA polymerase V complex DNA-directed RNA polymerase IV complex nucleolus cullin deneddylation RNA polymerase II activity COP9 signalosome DNA-directed RNA polymerase II, core complex proteasome complex maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Purine metabolism small-subunit processome | details |
Expression profiles
 Show details about module gene expression profiling |