TissueCFM001351's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Pathogenic Escherichia coli infection | 0.000413724 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000861 | AT4G16830 (1.00E-34) | Hyaluronan / mRNA binding family |
| CRO_T002489 | AT1G13730 (8.00E-42) | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| CRO_T005167 | AT4G38710 (8.00E-45) | glycine-rich protein |
| CRO_T012105 | - | - |
| CRO_T018931 | AT4G34110 (5.00E-11) | ATPAB2|ARABIDOPSIS POLY(A) BINDING 2; PAB2|poly(A) binding protein 2 |
| CRO_T023020 | AT5G11760 (2.00E-10) | unknown protein |
| CRO_T023074 | AT5G21160 (7.00E-15) | AtLARP1a|La related protein 1a |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000108 | lysyl-tRNA aminoacylation plasmodesma lysine-tRNA ligase activity single-organism metabolic process phosphatidylcholine acyl editing phospholipases phospholipid remodeling (phosphatidylcholine, yeast) cytosol Peroxisome Aminoacyl-tRNA biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000243 | Ribosome biogenesis in eukaryotes folate polyglutamylation II glutamate removal from folates Pathogenic Escherichia coli infection nucleolus biotin biosynthesis from 8-amino-7-oxononanoate I Noc2p-Noc3p complex Noc1p-Noc2p complex cytoplasmic ribonucleoprotein granule extrinsic component of plastid membrane | details |
| TissueCFM000554 | molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding nucleotide binding carbohydrate metabolic process | details |
| TissueCFM000631 | sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: mTERF double-stranded DNA binding | details |
| TissueCFM000652 | Pathogenic Escherichia coli infection NF-kappa B signaling pathway triacylglycerol degradation translational elongation carbohydrate transport peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: ERF | details |
| TissueCFM000657 | Spliceosome lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) regulation of DNA endoreduplication inositol-1,4,5-trisphosphate 3-kinase activity molybdenum cofactor biosynthesis phloem or xylem histogenesis Transcription_related, Transcription factor: C3H Inositol phosphate metabolism Ubiquitin mediated proteolysis | details |
| TissueCFM001225 | nucleotide binding ureide catabolic process purine nucleobase catabolic process allantoin catabolic process Spliceosome allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) ureidoglycine aminohydrolase activity molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding Transcription_related, Transcription factor: C3H | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001686 | phospholipid desaturation Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase Transcription_related, Transcription regulator: SET Oxidative phosphorylation | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
Expression profiles
 Show details about module gene expression profiling |