TissueCFM001661's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) | 0.001063594 | plantCyc |
| inositol-1,4,5-trisphosphate 3-kinase activity | 0.002955301 | GO:0008440 |
| RNA binding | 0.004113591 | GO:0003723 |
| nucleotide binding | 0.005656942 | GO:0000166 |
| sugar:proton symporter activity | 0.014735076 | GO:0005351 |
| proton transport | 0.022357933 | GO:0015992 |
| carbohydrate transport | 0.022357933 | GO:0008643 |
| Inositol phosphate metabolism | 0.025975397 | KEGG pathway |
| Spliceosome | 0.04413962 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003613 | AT4G35335 (9.00E-57) | Nucleotide-sugar transporter family protein |
| CRO_T015386 | AT5G61760 (9.00E-105) | ATIPK2BETA|INOSITOL POLYPHOSPHATE KINASE 2 BETA |
| CRO_T021281 | AT3G24150 (6.00E-51) | unknown protein |
| CRO_T026983 | AT5G54580 (2.00E-19) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T033245 | AT1G43690 (0) | ubiquitin interaction motif-containing protein |
| CRO_T033679 | AT1G60830 (1.00E-04) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000131 | Transcription_related, Transcription factor: HB | details |
| TissueCFM000190 | proteolysis involved in cellular protein catabolic process translational initiation ATP hydrolysis coupled proton transport ATP synthesis coupled proton transport cysteine-type endopeptidase activity ribosome binding proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism extracellular space proton-transporting ATP synthase complex, catalytic core F(1) Lysosome rRNA binding translation initiation factor activity Oxidative phosphorylation | details |
| TissueCFM000657 | Spliceosome lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) regulation of DNA endoreduplication inositol-1,4,5-trisphosphate 3-kinase activity molybdenum cofactor biosynthesis phloem or xylem histogenesis Transcription_related, Transcription factor: C3H Inositol phosphate metabolism Ubiquitin mediated proteolysis | details |
| TissueCFM001082 | Transcription_related, Transcription factor: Alfin-like peroxisome organization pollen germination autophagosome assembly protein targeting to vacuole peroxisomal membrane pre-autophagosomal structure clathrin adaptor complex mitochondrial large ribosomal subunit large ribosomal subunit rRNA binding transmembrane receptor protein kinase activity nucleoplasm | details |
| TissueCFM001225 | nucleotide binding ureide catabolic process purine nucleobase catabolic process allantoin catabolic process Spliceosome allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) ureidoglycine aminohydrolase activity molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding Transcription_related, Transcription factor: C3H | details |
| TissueCFM001260 | Selenocompound metabolism methionyl-tRNA aminoacylation | details |
| TissueCFM001467 | Arp2/3 protein complex GPI-anchor transamidase complex trichome morphogenesis Arp2/3 complex-mediated actin nucleation attachment of GPI anchor to protein multidimensional cell growth CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Autophagy - yeast Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Glycerolipid metabolism | details |
| TissueCFM001775 | uroporphyrinogen-III synthase activity regulation of timing of transition from vegetative to reproductive phase histone H4-K5 acetylation tetrapyrrole biosynthetic process histone acetyltransferase activity NuA4 histone acetyltransferase complex histone acetylation regulation of flower development regulation of transcription, DNA-templated sugar:proton symporter activity Transcription_related, Transcription factor: C2H2 carbohydrate transport proton transport Golgi membrane | details |
Expression profiles
 Show details about module gene expression profiling |