TissueCFM000689's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lipid IVA biosynthesis | 0.001240731 | plantCyc |
| Lipopolysaccharide biosynthesis | 0.001860602 | KEGG pathway |
| lipid X metabolic process | 0.010533704 | GO:2001289 |
| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity | 0.01349211 | GO:0008780 |
| glycerol transport | 0.026292266 | GO:0015793 |
| water transport | 0.026292266 | GO:0006833 |
| cellular water homeostasis | 0.026292266 | GO:0009992 |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.028260062 | kinase family |
| Transcription_related, Transcription factor: B3 | 0.028260062 | TF family |
| Transcription_related, Transcription factor: HB | 0.028260062 | TF family |
| glycerol channel activity | 0.031431389 | GO:0015254 |
| water channel activity | 0.031431389 | GO:0015250 |
| ion transmembrane transport | 0.035713132 | GO:0034220 |
| lipid binding | 0.048175592 | GO:0008289 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008045 | AT4G35100 (1.00E-141) | PIP2; 7|PLASMA MEMBRANE INTRINSIC PROTEIN 2; 7; PIP3|plasma membrane intrinsic protein 3; PIP3A|PLASMA MEMBRANE INTRINSIC PROTEIN 3A |
| CRO_T012968 | AT1G05230 (0) | HDG2|homeodomain GLABROUS 2 |
| CRO_T016621 | AT4G29540 (4.00E-92) | AtLpxA; LpxA|bacterial transferase hexapeptide repeat-containing protein |
| CRO_T020731 | - | - |
| CRO_T020835 | AT1G51120 (7.00E-16) | AP2/B3 transcription factor family protein |
| CRO_T028307 | AT5G47750 (3.00E-115) | D6PKL2|D6 protein kinase like 2 |
| CRO_T031755 | AT1G04280 (4.00E-168) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001046 | mannose-1-phosphate guanylyltransferase (GDP) activity Transcription_related, Transcription regulator: SWI/SNF-BAF60b GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism Inositol phosphate metabolism phospholipases water channel activity glycerol channel activity Transcription_related, Transcription factor: MYB cellular water homeostasis water transport glycerol transport hydrolase activity, acting on ester bonds translation initiation factor activity biosynthetic process translational initiation ion transmembrane transport | details |
| TissueCFM001213 | lipid IVA biosynthesis acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity lipid X metabolic process Lipopolysaccharide biosynthesis CDP-diacylglycerol biosynthesis I Transcription_related, Transcription factor: C2C2-GATA glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity diacylglycerol and triacylglycerol biosynthesis cutin biosynthetic process mRNA processing response to biotic stimulus Glycerolipid metabolism mRNA surveillance pathway | details |
| TissueCFM001354 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription regulator: SWI/SNF-BAF60b replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex strand invasion regulation of cyclin-dependent protein serine/threonine kinase activity mitotic recombination regulation of mitotic cell cycle reciprocal meiotic recombination response to ionizing radiation meiotic DNA recombinase assembly Homologous recombination cellular water homeostasis water transport glycerol transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding water channel activity DNA-dependent ATPase activity glycerol channel activity single-stranded DNA binding double-stranded DNA binding ion transmembrane transport translational initiation translation initiation factor activity | details |
| TissueCFM001355 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phosphatidate metabolism, as a signaling molecule replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex meiotic DNA recombinase assembly mitotic recombination response to ionizing radiation strand invasion reciprocal meiotic recombination cellular water homeostasis glycerol transport water transport ion transmembrane transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding glycerol channel activity single-stranded DNA binding DNA-dependent ATPase activity water channel activity double-stranded DNA binding coenzyme binding Homologous recombination RNA transport | details |
| TissueCFM001499 | leucopelargonidin and leucocyanidin biosynthesis phosphoprotein binding Transcription_related, Transcription factor: HB lipid binding dioxygenase activity | details |
| TissueCFM001616 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism mannose-1-phosphate guanylyltransferase (GDP) activity water channel activity glycerol channel activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase water transport glycerol transport cellular water homeostasis ion transmembrane transport Ubiquitin_Proteasome_system, E3: U-box biosynthetic process intracellular signal transduction | details |
| TissueCFM001657 | leucopelargonidin and leucocyanidin biosynthesis phosphoprotein binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: HB water transport glycerol transport cellular water homeostasis glycerol channel activity water channel activity ion transmembrane transport lipid binding | details |
| TissueCFM001726 | Glycosaminoglycan degradation 2-hydroxyglutarate dehydrogenase activity (R)-2-hydroxyglutarate dehydrogenase activity phosphoprotein binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Ubiquitin_Proteasome_system, E2: UBC Transcription_related, Transcription factor: HB nitrogen compound metabolic process photorespiration lipid binding | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |