TissueCFM001657's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| leucopelargonidin and leucocyanidin biosynthesis | 0.002657217 | plantCyc |
| phosphoprotein binding | 0.007710803 | GO:0051219 |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.017514326 | kinase family |
| Transcription_related, Transcription factor: HB | 0.019840987 | TF family |
| water transport | 0.021426969 | GO:0006833 |
| glycerol transport | 0.021426969 | GO:0015793 |
| cellular water homeostasis | 0.021426969 | GO:0009992 |
| glycerol channel activity | 0.026949948 | GO:0015254 |
| water channel activity | 0.026949948 | GO:0015250 |
| ion transmembrane transport | 0.027291141 | GO:0034220 |
| lipid binding | 0.041320203 | GO:0008289 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008045 | AT4G35100 (1.00E-141) | PIP2; 7|PLASMA MEMBRANE INTRINSIC PROTEIN 2; 7; PIP3|plasma membrane intrinsic protein 3; PIP3A|PLASMA MEMBRANE INTRINSIC PROTEIN 3A |
| CRO_T008727 | AT5G42800 (1.00E-78) | DFR|dihydroflavonol 4-reductase |
| CRO_T012968 | AT1G05230 (0) | HDG2|homeodomain GLABROUS 2 |
| CRO_T015313 | AT2G37080 (3.00E-112) | RIP2|ROP interactive partner 2 |
| CRO_T028307 | AT5G47750 (3.00E-115) | D6PKL2|D6 protein kinase like 2 |
| CRO_T030288 | AT4G25310 (6.00E-57) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000689 | lipid IVA biosynthesis Lipopolysaccharide biosynthesis lipid X metabolic process acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity glycerol transport water transport cellular water homeostasis Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: HB glycerol channel activity water channel activity ion transmembrane transport lipid binding | details |
| TissueCFM000733 | Transcription_related, Transcription factor: BBR-BPC L-valine degradation I non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 D-gluconate catabolic process Carbon metabolism gluconokinase activity receptor activity aldehyde dehydrogenase (NAD) activity malonate-semialdehyde dehydrogenase (acetylating) activity protein phosphatase inhibitor activity pectate lyase activity abscisic acid binding methylmalonate-semialdehyde dehydrogenase (acylating) activity regulation of protein serine/threonine phosphatase activity | details |
| TissueCFM000750 | clathrin-mediated endocytosis clathrin heavy chain binding Transcription_related, Transcription factor: BBR-BPC leucopelargonidin and leucocyanidin biosynthesis phosphatidate metabolism, as a signaling molecule structural molecule activity clathrin vesicle coat Transcription_related, Transcription factor: GRAS | details |
| TissueCFM000937 | cytoplasmic ubiquitin ligase complex trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Atg8 ligase activity Z-farnesyl diphosphate synthase activity actin filament-based process mitophagy farnesyl diphosphate biosynthetic process nucleophagy autophagosome assembly geranyltranstransferase activity non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Transcription_related, Transcription factor: C2C2-GATA dimethylallyltranstransferase activity pectate lyase activity structural constituent of cytoskeleton Autophagy - animal Terpenoid backbone biosynthesis pectin catabolic process protein transport Pentose and glucuronate interconversions | details |
| TissueCFM001046 | mannose-1-phosphate guanylyltransferase (GDP) activity Transcription_related, Transcription regulator: SWI/SNF-BAF60b GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism Inositol phosphate metabolism phospholipases water channel activity glycerol channel activity Transcription_related, Transcription factor: MYB cellular water homeostasis water transport glycerol transport hydrolase activity, acting on ester bonds translation initiation factor activity biosynthetic process translational initiation ion transmembrane transport | details |
| TissueCFM001059 | leucopelargonidin and leucocyanidin biosynthesis vindoline and vinblastine biosynthesis dioxygenase activity serine-type endopeptidase activity metal ion binding | details |
| TissueCFM001139 | microtubule-based movement microtubule binding ATP-dependent microtubule motor activity, plus-end-directed kinesin complex Linoleic acid metabolism phosphoprotein binding (R)-2-hydroxyglutarate dehydrogenase activity 2-hydroxyglutarate dehydrogenase activity cortical microtubule ATP binding cellulose microfibril organization photorespiration jasmonic acid biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Ubiquitin_Proteasome_system, E2: UBC nitrogen compound metabolic process microtubule microtubule motor activity | details |
| TissueCFM001354 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription regulator: SWI/SNF-BAF60b replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex strand invasion regulation of cyclin-dependent protein serine/threonine kinase activity mitotic recombination regulation of mitotic cell cycle reciprocal meiotic recombination response to ionizing radiation meiotic DNA recombinase assembly Homologous recombination cellular water homeostasis water transport glycerol transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding water channel activity DNA-dependent ATPase activity glycerol channel activity single-stranded DNA binding double-stranded DNA binding ion transmembrane transport translational initiation translation initiation factor activity | details |
| TissueCFM001355 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phosphatidate metabolism, as a signaling molecule replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex meiotic DNA recombinase assembly mitotic recombination response to ionizing radiation strand invasion reciprocal meiotic recombination cellular water homeostasis glycerol transport water transport ion transmembrane transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding glycerol channel activity single-stranded DNA binding DNA-dependent ATPase activity water channel activity double-stranded DNA binding coenzyme binding Homologous recombination RNA transport | details |
| TissueCFM001499 | leucopelargonidin and leucocyanidin biosynthesis phosphoprotein binding Transcription_related, Transcription factor: HB lipid binding dioxygenase activity | details |
| TissueCFM001576 | pyruvate decarboxylation to acetyl CoA tyrosine catabolic process homogentisate catabolic process actin filament-based process homogentisate 1,2-dioxygenase activity Atg8 ligase activity nucleophagy L-phenylalanine catabolic process mitophagy cytoplasmic ubiquitin ligase complex autophagosome assembly Autophagy - animal Tyrosine metabolism Transcription_related, Transcription factor: C2C2-GATA cytosolic ribosome structural constituent of cytoskeleton | details |
| TissueCFM001579 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: NF-YC L-valine degradation I RIG-I-like receptor signaling pathway phosphoprotein binding malonate-semialdehyde dehydrogenase (acetylating) activity methylmalonate-semialdehyde dehydrogenase (acylating) activity receptor activity abscisic acid binding protein phosphatase inhibitor activity aldehyde dehydrogenase (NAD) activity glutathione metabolic process abscisic acid-activated signaling pathway RNA secondary structure unwinding regulation of protein serine/threonine phosphatase activity negative regulation of catalytic activity Glutathione metabolism | details |
| TissueCFM001616 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism mannose-1-phosphate guanylyltransferase (GDP) activity water channel activity glycerol channel activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase water transport glycerol transport cellular water homeostasis ion transmembrane transport Ubiquitin_Proteasome_system, E3: U-box biosynthetic process intracellular signal transduction | details |
| TissueCFM001639 | L-cysteine biosynthesis I formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc plant-type cell wall organization cellular amino acid biosynthetic process cysteine biosynthetic process from serine cell wall cysteine synthase activity beta-galactosidase activity | details |
| TissueCFM001640 | Antigen processing and presentation cell wall hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytoplasmic, membrane-bounded vesicle plant-type cell wall organization protein catabolic process beta-galactosidase activity aspartic-type endopeptidase activity dioxygenase activity carbohydrate binding | details |
| TissueCFM001665 | phosphoprotein binding Phenylpropanoid biosynthesis Transcription_related, Transcription factor: C2C2-GATA Transcription_related, Transcription factor: HB | details |
| TissueCFM001726 | Glycosaminoglycan degradation 2-hydroxyglutarate dehydrogenase activity (R)-2-hydroxyglutarate dehydrogenase activity phosphoprotein binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Ubiquitin_Proteasome_system, E2: UBC Transcription_related, Transcription factor: HB nitrogen compound metabolic process photorespiration lipid binding | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
| TissueCFM001820 | pyruvate decarboxylation to acetyl CoA Carbon metabolism transferase activity, transferring acyl groups formate dehydrogenase (NAD+) activity Atg8 ligase activity homogentisate 1,2-dioxygenase activity phosphoglycerate dehydrogenase activity tyrosine catabolic process homogentisate catabolic process serine family amino acid biosynthetic process formate catabolic process Tyrosine metabolism L-phenylalanine catabolic process nucleophagy mitophagy cytoplasmic ubiquitin ligase complex Autophagy - animal autophagosome assembly cytosolic ribosome cytosol chloroplast part protein transport NAD binding dioxygenase activity | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |